Gene : Phvul.006G117800 P. vulgaris v2.1
Defline:  (1 of 1) K14405 - pre-mRNA 3'-end-processing factor FIP1 (FIP1L1, FIP1) Genomic Order:  1170
Name:  ? Phvul.006G117800 Secondary Identifier:  ? PAC:37171588
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G117800 0.5kb upstream 0.5kb upstream 7303 true Chr06: 22578637-22585939 Phaseolus vulgaris
Phvul.006G117800 0.5kb upstream 0.5kb upstream 500 false Chr06: 22585440-22585939 Phaseolus vulgaris
Phvul.006G117800 0.5kb downstream 0.5kb downstream 7303 true Chr06: 22578137-22585439 Phaseolus vulgaris
Phvul.006G117800 0.5kb downstream 0.5kb downstream 500 false Chr06: 22578137-22578636 Phaseolus vulgaris
Phvul.006G117800 1.0kb upstream 1.0kb upstream 7803 true Chr06: 22578637-22586439 Phaseolus vulgaris
Phvul.006G117800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22585440-22586439 Phaseolus vulgaris
Phvul.006G117800 1.0kb downstream 1.0kb downstream 7803 true Chr06: 22577637-22585439 Phaseolus vulgaris
Phvul.006G117800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22577637-22578636 Phaseolus vulgaris
Phvul.006G117800 2.0kb upstream 2.0kb upstream 8803 true Chr06: 22578637-22587439 Phaseolus vulgaris
Phvul.006G117800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22585440-22587439 Phaseolus vulgaris
Phvul.006G117800 2.0kb downstream 2.0kb downstream 8803 true Chr06: 22576637-22585439 Phaseolus vulgaris
Phvul.006G117800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22576637-22578636 Phaseolus vulgaris
Phvul.006G117800 5.0kb upstream 5.0kb upstream 11803 true Chr06: 22578637-22590439 Phaseolus vulgaris
Phvul.006G117800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22585440-22590439 Phaseolus vulgaris
Phvul.006G117800 5.0kb downstream 5.0kb downstream 11803 true Chr06: 22573637-22585439 Phaseolus vulgaris
Phvul.006G117800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22573637-22578636 Phaseolus vulgaris
Phvul.006G117800 10.0kb upstream 10.0kb upstream 16803 true Chr06: 22578637-22595439 Phaseolus vulgaris
Phvul.006G117800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22585440-22595439 Phaseolus vulgaris
Phvul.006G117800 10.0kb downstream 10.0kb downstream 16803 true Chr06: 22568637-22585439 Phaseolus vulgaris
Phvul.006G117800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22568637-22578636 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303869 5265 Fabidae View MSA
124073044 5270 Rosid View MSA
123743134 5271 Pentapetalae View MSA
122794251 5272 Eudicot View MSA
122050325 5273 Angiosperm View MSA
121345578 5274 Embryophyte View MSA
123425422 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.517577 0.0 2.5696   Low
cufflinks 1.69407 0.0 6.1576    
cufflinks 2.70683 0.0 8.97256   High
cufflinks 0.316385 0.0 1.41522 Low Low
cufflinks 0.99368 0.0 4.27899    
cufflinks 0.936688 0.0 3.10041    
cufflinks 1.14404 0.0 4.6051    
cufflinks 2.27155 0.0 7.60523   High
cufflinks 1.17717 0.0 4.75295    
cufflinks 1.10697 0.0 4.51963    
cufflinks 0.652453 0.0 2.40103    

0 Strain