Gene : Phvul.009G008300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31500:SF0 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  81
Name:  ? Phvul.009G008300 Secondary Identifier:  ? PAC:37151426
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G008300 0.5kb upstream 0.5kb upstream 4325 true Chr09: 1270666-1274990 Phaseolus vulgaris
Phvul.009G008300 0.5kb upstream 0.5kb upstream 500 false Chr09: 1274491-1274990 Phaseolus vulgaris
Phvul.009G008300 0.5kb downstream 0.5kb downstream 4325 true Chr09: 1270166-1274490 Phaseolus vulgaris
Phvul.009G008300 0.5kb downstream 0.5kb downstream 500 false Chr09: 1270166-1270665 Phaseolus vulgaris
Phvul.009G008300 1.0kb upstream 1.0kb upstream 4825 true Chr09: 1270666-1275490 Phaseolus vulgaris
Phvul.009G008300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 1274491-1275490 Phaseolus vulgaris
Phvul.009G008300 1.0kb downstream 1.0kb downstream 4825 true Chr09: 1269666-1274490 Phaseolus vulgaris
Phvul.009G008300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 1269666-1270665 Phaseolus vulgaris
Phvul.009G008300 2.0kb upstream 2.0kb upstream 5825 true Chr09: 1270666-1276490 Phaseolus vulgaris
Phvul.009G008300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 1274491-1276490 Phaseolus vulgaris
Phvul.009G008300 2.0kb downstream 2.0kb downstream 5825 true Chr09: 1268666-1274490 Phaseolus vulgaris
Phvul.009G008300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 1268666-1270665 Phaseolus vulgaris
Phvul.009G008300 5.0kb upstream 5.0kb upstream 8825 true Chr09: 1270666-1279490 Phaseolus vulgaris
Phvul.009G008300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 1274491-1279490 Phaseolus vulgaris
Phvul.009G008300 5.0kb downstream 5.0kb downstream 8825 true Chr09: 1265666-1274490 Phaseolus vulgaris
Phvul.009G008300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 1265666-1270665 Phaseolus vulgaris
Phvul.009G008300 10.0kb upstream 10.0kb upstream 13825 true Chr09: 1270666-1284490 Phaseolus vulgaris
Phvul.009G008300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 1274491-1284490 Phaseolus vulgaris
Phvul.009G008300 10.0kb downstream 10.0kb downstream 13825 true Chr09: 1260666-1274490 Phaseolus vulgaris
Phvul.009G008300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 1260666-1270665 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304333 5265 Fabidae View MSA
124069070 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.8688 0.0 43.7521    
cufflinks 33.9595 0.0 88.5215 High High
cufflinks 9.03863 0.0 24.2346    
cufflinks 7.73742 0.0 21.0352    
cufflinks 13.4382 0.0 35.1175    
cufflinks 25.259 0.0 65.3466    
cufflinks 2.08227 0.0 6.42422   Low
cufflinks 2.04643 0.0 6.33255   Low
cufflinks 0.818048 0.0 2.81633   Low
cufflinks 13.7303 0.0 35.8544    
cufflinks 16.1078 0.0 41.8032    

0 Strain