Gene : Phvul.006G117600 P. vulgaris v2.1
Defline:  (1 of 40) PF00582 - Universal stress protein family (Usp) Genomic Order:  1168
Name:  ? Phvul.006G117600 Secondary Identifier:  ? PAC:37174072
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G117600 0.5kb upstream 0.5kb upstream 1783 true Chr06: 22550075-22551857 Phaseolus vulgaris
Phvul.006G117600 0.5kb upstream 0.5kb upstream 500 false Chr06: 22551358-22551857 Phaseolus vulgaris
Phvul.006G117600 0.5kb downstream 0.5kb downstream 1783 true Chr06: 22549575-22551357 Phaseolus vulgaris
Phvul.006G117600 0.5kb downstream 0.5kb downstream 500 false Chr06: 22549575-22550074 Phaseolus vulgaris
Phvul.006G117600 1.0kb upstream 1.0kb upstream 2283 true Chr06: 22550075-22552357 Phaseolus vulgaris
Phvul.006G117600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22551358-22552357 Phaseolus vulgaris
Phvul.006G117600 1.0kb downstream 1.0kb downstream 2283 true Chr06: 22549075-22551357 Phaseolus vulgaris
Phvul.006G117600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22549075-22550074 Phaseolus vulgaris
Phvul.006G117600 2.0kb upstream 2.0kb upstream 3283 true Chr06: 22550075-22553357 Phaseolus vulgaris
Phvul.006G117600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22551358-22553357 Phaseolus vulgaris
Phvul.006G117600 2.0kb downstream 2.0kb downstream 3283 true Chr06: 22548075-22551357 Phaseolus vulgaris
Phvul.006G117600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22548075-22550074 Phaseolus vulgaris
Phvul.006G117600 5.0kb upstream 5.0kb upstream 6283 true Chr06: 22550075-22556357 Phaseolus vulgaris
Phvul.006G117600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22551358-22556357 Phaseolus vulgaris
Phvul.006G117600 5.0kb downstream 5.0kb downstream 6283 true Chr06: 22545075-22551357 Phaseolus vulgaris
Phvul.006G117600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22545075-22550074 Phaseolus vulgaris
Phvul.006G117600 10.0kb upstream 10.0kb upstream 11283 true Chr06: 22550075-22561357 Phaseolus vulgaris
Phvul.006G117600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22551358-22561357 Phaseolus vulgaris
Phvul.006G117600 10.0kb downstream 10.0kb downstream 11283 true Chr06: 22540075-22551357 Phaseolus vulgaris
Phvul.006G117600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22540075-22550074 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302986 5265 Fabidae View MSA
124063992 5270 Rosid View MSA
123739309 5271 Pentapetalae View MSA
122785643 5272 Eudicot View MSA
122048128 5273 Angiosperm View MSA
121348607 5274 Embryophyte View MSA
123427901 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.56549 0.0 5.62213   High
cufflinks 0.592644 0.0 2.31114    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.1175 0.0 7.37368   High
cufflinks 0.0797406 0.0 0.374426 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.182801 0.0 0.783605 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.624696 0.0 2.43014    
cufflinks 0.319415 0.0 1.30918 Low  

0 Strain