Gene : Phvul.009G010600 P. vulgaris v2.1
Defline:  (1 of 1) K14799 - pre-rRNA-processing protein TSR1 (TSR1) Genomic Order:  99
Name:  ? Phvul.009G010600 Secondary Identifier:  ? PAC:37150017
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G010600 0.5kb upstream 0.5kb upstream 7994 true Chr09: 1854725-1862718 Phaseolus vulgaris
Phvul.009G010600 0.5kb upstream 0.5kb upstream 500 false Chr09: 1862219-1862718 Phaseolus vulgaris
Phvul.009G010600 0.5kb downstream 0.5kb downstream 7994 true Chr09: 1854225-1862218 Phaseolus vulgaris
Phvul.009G010600 0.5kb downstream 0.5kb downstream 500 false Chr09: 1854225-1854724 Phaseolus vulgaris
Phvul.009G010600 1.0kb upstream 1.0kb upstream 8494 true Chr09: 1854725-1863218 Phaseolus vulgaris
Phvul.009G010600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 1862219-1863218 Phaseolus vulgaris
Phvul.009G010600 1.0kb downstream 1.0kb downstream 8494 true Chr09: 1853725-1862218 Phaseolus vulgaris
Phvul.009G010600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 1853725-1854724 Phaseolus vulgaris
Phvul.009G010600 2.0kb upstream 2.0kb upstream 9494 true Chr09: 1854725-1864218 Phaseolus vulgaris
Phvul.009G010600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 1862219-1864218 Phaseolus vulgaris
Phvul.009G010600 2.0kb downstream 2.0kb downstream 9494 true Chr09: 1852725-1862218 Phaseolus vulgaris
Phvul.009G010600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 1852725-1854724 Phaseolus vulgaris
Phvul.009G010600 5.0kb upstream 5.0kb upstream 12494 true Chr09: 1854725-1867218 Phaseolus vulgaris
Phvul.009G010600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 1862219-1867218 Phaseolus vulgaris
Phvul.009G010600 5.0kb downstream 5.0kb downstream 12494 true Chr09: 1849725-1862218 Phaseolus vulgaris
Phvul.009G010600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 1849725-1854724 Phaseolus vulgaris
Phvul.009G010600 10.0kb upstream 10.0kb upstream 17494 true Chr09: 1854725-1872218 Phaseolus vulgaris
Phvul.009G010600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 1862219-1872218 Phaseolus vulgaris
Phvul.009G010600 10.0kb downstream 10.0kb downstream 17494 true Chr09: 1844725-1862218 Phaseolus vulgaris
Phvul.009G010600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 1844725-1854724 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299777 5265 Fabidae View MSA
124066682 5270 Rosid View MSA
123739487 5271 Pentapetalae View MSA
122792975 5272 Eudicot View MSA
122044889 5273 Angiosperm View MSA
121347720 5274 Embryophyte View MSA
123428215 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.87416 0.0 15.9165   Low
cufflinks 13.3325 0.0 34.5403    
cufflinks 10.8616 0.0 28.2738    
cufflinks 5.5841 0.0 15.3314   Low
cufflinks 10.4685 0.0 27.4301    
cufflinks 9.62876 0.0 25.2242    
cufflinks 13.6239 0.0 35.285    
cufflinks 17.1138 0.0 44.2447   High
cufflinks 15.033 0.0 38.8885   High
cufflinks 9.88735 0.0 25.8842    
cufflinks 10.3324 0.0 27.0621    

0 Strain