Gene : Phvul.006G120200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21011//PTHR21011:SF4 - MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 // SUBFAMILY NOT NAMED Genomic Order:  1196
Name:  ? Phvul.006G120200 Secondary Identifier:  ? PAC:37173478
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G120200 0.5kb upstream 0.5kb upstream 3573 true Chr06: 22852069-22855641 Phaseolus vulgaris
Phvul.006G120200 0.5kb upstream 0.5kb upstream 500 false Chr06: 22855142-22855641 Phaseolus vulgaris
Phvul.006G120200 0.5kb downstream 0.5kb downstream 3573 true Chr06: 22851569-22855141 Phaseolus vulgaris
Phvul.006G120200 0.5kb downstream 0.5kb downstream 500 false Chr06: 22851569-22852068 Phaseolus vulgaris
Phvul.006G120200 1.0kb upstream 1.0kb upstream 4073 true Chr06: 22852069-22856141 Phaseolus vulgaris
Phvul.006G120200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22855142-22856141 Phaseolus vulgaris
Phvul.006G120200 1.0kb downstream 1.0kb downstream 4073 true Chr06: 22851069-22855141 Phaseolus vulgaris
Phvul.006G120200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22851069-22852068 Phaseolus vulgaris
Phvul.006G120200 2.0kb upstream 2.0kb upstream 5073 true Chr06: 22852069-22857141 Phaseolus vulgaris
Phvul.006G120200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22855142-22857141 Phaseolus vulgaris
Phvul.006G120200 2.0kb downstream 2.0kb downstream 5073 true Chr06: 22850069-22855141 Phaseolus vulgaris
Phvul.006G120200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22850069-22852068 Phaseolus vulgaris
Phvul.006G120200 5.0kb upstream 5.0kb upstream 8073 true Chr06: 22852069-22860141 Phaseolus vulgaris
Phvul.006G120200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22855142-22860141 Phaseolus vulgaris
Phvul.006G120200 5.0kb downstream 5.0kb downstream 8073 true Chr06: 22847069-22855141 Phaseolus vulgaris
Phvul.006G120200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22847069-22852068 Phaseolus vulgaris
Phvul.006G120200 10.0kb upstream 10.0kb upstream 13073 true Chr06: 22852069-22865141 Phaseolus vulgaris
Phvul.006G120200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22855142-22865141 Phaseolus vulgaris
Phvul.006G120200 10.0kb downstream 10.0kb downstream 13073 true Chr06: 22842069-22855141 Phaseolus vulgaris
Phvul.006G120200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22842069-22852068 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299955 5265 Fabidae View MSA
124066561 5270 Rosid View MSA
123738958 5271 Pentapetalae View MSA
122791787 5272 Eudicot View MSA
122045597 5273 Angiosperm View MSA
121347704 5274 Embryophyte View MSA
123380604 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.2757 0.0 83.4287    
cufflinks 23.582 0.0 61.38    
cufflinks 37.1224 0.0 95.9776   High
cufflinks 24.3556 0.0 63.4257    
cufflinks 14.4223 0.0 38.8342    
cufflinks 34.1701 0.0 88.3236 High High
cufflinks 8.02919 0.0 22.5753   Low
cufflinks 15.1347 0.0 40.3117    
cufflinks 6.74539 0.0 19.3268   Low
cufflinks 23.3643 0.0 60.9034    
cufflinks 14.7464 0.0 39.5828    

0 Strain