Gene : Phvul.006G122500 P. vulgaris v2.1
Defline:  (1 of 1) K17268 - coatomer protein complex, subunit epsilon (COPE) Genomic Order:  1219
Name:  ? Phvul.006G122500 Secondary Identifier:  ? PAC:37172420
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G122500 0.5kb upstream 0.5kb upstream 3923 true Chr06: 23103826-23107748 Phaseolus vulgaris
Phvul.006G122500 0.5kb upstream 0.5kb upstream 500 false Chr06: 23103826-23104325 Phaseolus vulgaris
Phvul.006G122500 0.5kb downstream 0.5kb downstream 3923 true Chr06: 23104326-23108248 Phaseolus vulgaris
Phvul.006G122500 0.5kb downstream 0.5kb downstream 500 false Chr06: 23107749-23108248 Phaseolus vulgaris
Phvul.006G122500 1.0kb upstream 1.0kb upstream 4423 true Chr06: 23103326-23107748 Phaseolus vulgaris
Phvul.006G122500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23103326-23104325 Phaseolus vulgaris
Phvul.006G122500 1.0kb downstream 1.0kb downstream 4423 true Chr06: 23104326-23108748 Phaseolus vulgaris
Phvul.006G122500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23107749-23108748 Phaseolus vulgaris
Phvul.006G122500 2.0kb upstream 2.0kb upstream 5423 true Chr06: 23102326-23107748 Phaseolus vulgaris
Phvul.006G122500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23102326-23104325 Phaseolus vulgaris
Phvul.006G122500 2.0kb downstream 2.0kb downstream 5423 true Chr06: 23104326-23109748 Phaseolus vulgaris
Phvul.006G122500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23107749-23109748 Phaseolus vulgaris
Phvul.006G122500 5.0kb upstream 5.0kb upstream 8423 true Chr06: 23099326-23107748 Phaseolus vulgaris
Phvul.006G122500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23099326-23104325 Phaseolus vulgaris
Phvul.006G122500 5.0kb downstream 5.0kb downstream 8423 true Chr06: 23104326-23112748 Phaseolus vulgaris
Phvul.006G122500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23107749-23112748 Phaseolus vulgaris
Phvul.006G122500 10.0kb upstream 10.0kb upstream 13423 true Chr06: 23094326-23107748 Phaseolus vulgaris
Phvul.006G122500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23094326-23104325 Phaseolus vulgaris
Phvul.006G122500 10.0kb downstream 10.0kb downstream 13423 true Chr06: 23104326-23117748 Phaseolus vulgaris
Phvul.006G122500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23107749-23117748 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300769 5265 Fabidae View MSA
124061720 5270 Rosid View MSA
123739353 5271 Pentapetalae View MSA
122787483 5272 Eudicot View MSA
122042986 5273 Angiosperm View MSA
121344320 5274 Embryophyte View MSA
123426837 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.4158 0.0 163.894 High Low
cufflinks 95.5309 0.0 259.16 High  
cufflinks 72.5522 0.0 191.63 High Low
cufflinks 147.509 0.0 422.304 High High
cufflinks 141.487 0.0 399.535 High High
cufflinks 84.8013 0.0 227.196 High  
cufflinks 81.3502 0.0 218.485 High  
cufflinks 81.0052 0.0 216.269 High  
cufflinks 108.464 0.0 299.142 High  
cufflinks 139.936 0.0 394.993 High  
cufflinks 156.597 0.0 448.946 High High

0 Strain