Gene : Phvul.006G121300 P. vulgaris v2.1
Defline:  (1 of 57) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  1207
Name:  ? Phvul.006G121300 Secondary Identifier:  ? PAC:37171397
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G121300 0.5kb upstream 0.5kb upstream 5383 true Chr06: 23017656-23023038 Phaseolus vulgaris
Phvul.006G121300 0.5kb upstream 0.5kb upstream 500 false Chr06: 23017656-23018155 Phaseolus vulgaris
Phvul.006G121300 0.5kb downstream 0.5kb downstream 5383 true Chr06: 23018156-23023538 Phaseolus vulgaris
Phvul.006G121300 0.5kb downstream 0.5kb downstream 500 false Chr06: 23023039-23023538 Phaseolus vulgaris
Phvul.006G121300 1.0kb upstream 1.0kb upstream 5883 true Chr06: 23017156-23023038 Phaseolus vulgaris
Phvul.006G121300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23017156-23018155 Phaseolus vulgaris
Phvul.006G121300 1.0kb downstream 1.0kb downstream 5883 true Chr06: 23018156-23024038 Phaseolus vulgaris
Phvul.006G121300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23023039-23024038 Phaseolus vulgaris
Phvul.006G121300 2.0kb upstream 2.0kb upstream 6883 true Chr06: 23016156-23023038 Phaseolus vulgaris
Phvul.006G121300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23016156-23018155 Phaseolus vulgaris
Phvul.006G121300 2.0kb downstream 2.0kb downstream 6883 true Chr06: 23018156-23025038 Phaseolus vulgaris
Phvul.006G121300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23023039-23025038 Phaseolus vulgaris
Phvul.006G121300 5.0kb upstream 5.0kb upstream 9883 true Chr06: 23013156-23023038 Phaseolus vulgaris
Phvul.006G121300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23013156-23018155 Phaseolus vulgaris
Phvul.006G121300 5.0kb downstream 5.0kb downstream 9883 true Chr06: 23018156-23028038 Phaseolus vulgaris
Phvul.006G121300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23023039-23028038 Phaseolus vulgaris
Phvul.006G121300 10.0kb upstream 10.0kb upstream 14883 true Chr06: 23008156-23023038 Phaseolus vulgaris
Phvul.006G121300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23008156-23018155 Phaseolus vulgaris
Phvul.006G121300 10.0kb downstream 10.0kb downstream 14883 true Chr06: 23018156-23033038 Phaseolus vulgaris
Phvul.006G121300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23023039-23033038 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312563 5265 Fabidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.7365 0.0 13.8788    
cufflinks 8.51422 0.0 26.4963    
cufflinks 1.18038 0.0 4.55441    
cufflinks 17.8501 0.0 57.6819   High
cufflinks 1.50423 0.0 5.51596    
cufflinks 1.49445 0.0 7.00396    
cufflinks 5.98178 0.0 22.763    
cufflinks 25.2608 0.0 82.583   High
cufflinks 0.89631 0.0 3.76871    
cufflinks 0.0939091 0.0 0.399745 Low Low
cufflinks 8.03608 0.0 29.3271    

0 Strain