Gene : Phvul.009G002300 P. vulgaris v2.1
Defline:  (1 of 1) 1.3.1.89 - tRNA-dihydrouridine(47) synthase (NAD(P)(+)) / tRNA-dihydrouridine synthase 3 Genomic Order:  23
Name:  ? Phvul.009G002300 Secondary Identifier:  ? PAC:37148731
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G002300 0.5kb upstream 0.5kb upstream 6147 true Chr09: 442380-448526 Phaseolus vulgaris
Phvul.009G002300 0.5kb upstream 0.5kb upstream 500 false Chr09: 448027-448526 Phaseolus vulgaris
Phvul.009G002300 0.5kb downstream 0.5kb downstream 6147 true Chr09: 441880-448026 Phaseolus vulgaris
Phvul.009G002300 0.5kb downstream 0.5kb downstream 500 false Chr09: 441880-442379 Phaseolus vulgaris
Phvul.009G002300 1.0kb upstream 1.0kb upstream 6647 true Chr09: 442380-449026 Phaseolus vulgaris
Phvul.009G002300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 448027-449026 Phaseolus vulgaris
Phvul.009G002300 1.0kb downstream 1.0kb downstream 6647 true Chr09: 441380-448026 Phaseolus vulgaris
Phvul.009G002300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 441380-442379 Phaseolus vulgaris
Phvul.009G002300 2.0kb upstream 2.0kb upstream 7647 true Chr09: 442380-450026 Phaseolus vulgaris
Phvul.009G002300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 448027-450026 Phaseolus vulgaris
Phvul.009G002300 2.0kb downstream 2.0kb downstream 7647 true Chr09: 440380-448026 Phaseolus vulgaris
Phvul.009G002300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 440380-442379 Phaseolus vulgaris
Phvul.009G002300 5.0kb upstream 5.0kb upstream 10647 true Chr09: 442380-453026 Phaseolus vulgaris
Phvul.009G002300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 448027-453026 Phaseolus vulgaris
Phvul.009G002300 5.0kb downstream 5.0kb downstream 10647 true Chr09: 437380-448026 Phaseolus vulgaris
Phvul.009G002300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 437380-442379 Phaseolus vulgaris
Phvul.009G002300 10.0kb upstream 10.0kb upstream 15647 true Chr09: 442380-458026 Phaseolus vulgaris
Phvul.009G002300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 448027-458026 Phaseolus vulgaris
Phvul.009G002300 10.0kb downstream 10.0kb downstream 15647 true Chr09: 432380-448026 Phaseolus vulgaris
Phvul.009G002300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 432380-442379 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301677 5265 Fabidae View MSA
124062721 5270 Rosid View MSA
123739972 5271 Pentapetalae View MSA
122787852 5272 Eudicot View MSA
122047874 5273 Angiosperm View MSA
121343819 5274 Embryophyte View MSA
123428585 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.3797 0.0 47.1057    
cufflinks 23.8147 0.0 68.8258    
cufflinks 32.8378 0.0 99.8065   High
cufflinks 12.638 0.0 36.8457   Low
cufflinks 19.9143 0.0 58.7868    
cufflinks 20.2836 0.0 59.4997    
cufflinks 21.2983 0.0 61.4822    
cufflinks 20.2692 0.0 58.5542    
cufflinks 23.4176 0.0 68.3373    
cufflinks 23.0148 0.0 66.9591    
cufflinks 18.7274 0.0 52.8575    

0 Strain