Gene : Phvul.006G111900 P. vulgaris v2.1
Defline:  (1 of 2) K17525 - chitinase domain-containing protein 1 (CHID1) Genomic Order:  1109
Name:  ? Phvul.006G111900 Secondary Identifier:  ? PAC:37172312
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G111900 0.5kb upstream 0.5kb upstream 5321 true Chr06: 22084497-22089817 Phaseolus vulgaris
Phvul.006G111900 0.5kb upstream 0.5kb upstream 500 false Chr06: 22089318-22089817 Phaseolus vulgaris
Phvul.006G111900 0.5kb downstream 0.5kb downstream 5321 true Chr06: 22083997-22089317 Phaseolus vulgaris
Phvul.006G111900 0.5kb downstream 0.5kb downstream 500 false Chr06: 22083997-22084496 Phaseolus vulgaris
Phvul.006G111900 1.0kb upstream 1.0kb upstream 5821 true Chr06: 22084497-22090317 Phaseolus vulgaris
Phvul.006G111900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 22089318-22090317 Phaseolus vulgaris
Phvul.006G111900 1.0kb downstream 1.0kb downstream 5821 true Chr06: 22083497-22089317 Phaseolus vulgaris
Phvul.006G111900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 22083497-22084496 Phaseolus vulgaris
Phvul.006G111900 2.0kb upstream 2.0kb upstream 6821 true Chr06: 22084497-22091317 Phaseolus vulgaris
Phvul.006G111900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 22089318-22091317 Phaseolus vulgaris
Phvul.006G111900 2.0kb downstream 2.0kb downstream 6821 true Chr06: 22082497-22089317 Phaseolus vulgaris
Phvul.006G111900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 22082497-22084496 Phaseolus vulgaris
Phvul.006G111900 5.0kb upstream 5.0kb upstream 9821 true Chr06: 22084497-22094317 Phaseolus vulgaris
Phvul.006G111900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 22089318-22094317 Phaseolus vulgaris
Phvul.006G111900 5.0kb downstream 5.0kb downstream 9821 true Chr06: 22079497-22089317 Phaseolus vulgaris
Phvul.006G111900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 22079497-22084496 Phaseolus vulgaris
Phvul.006G111900 10.0kb upstream 10.0kb upstream 14821 true Chr06: 22084497-22099317 Phaseolus vulgaris
Phvul.006G111900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 22089318-22099317 Phaseolus vulgaris
Phvul.006G111900 10.0kb downstream 10.0kb downstream 14821 true Chr06: 22074497-22089317 Phaseolus vulgaris
Phvul.006G111900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 22074497-22084496 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026747 5273 Angiosperm View MSA
122308473 5265 Fabidae View MSA
124069459 5270 Rosid View MSA
123741965 5271 Pentapetalae View MSA
122793996 5272 Eudicot View MSA
121348650 5274 Embryophyte View MSA
123425865 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.24341 0.0 25.6055    
cufflinks 9.53707 0.0 37.493   High
cufflinks 7.26348 0.0 32.8605    
cufflinks 8.32199 0.0 32.1076    
cufflinks 6.72461 0.0 26.7481    
cufflinks 6.19652 0.0 26.1136    
cufflinks 5.85598 0.0 23.5933   Low
cufflinks 7.80098 0.0 29.5322    
cufflinks 5.73875 0.0 23.9418   Low
cufflinks 9.2988 0.0 34.3461   High
cufflinks 6.57681 0.0 26.0467    

0 Strain