Gene : Phvul.010G157700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22847:SF480 - PROTEIN TOPLESS-RELATED Genomic Order:  1588
Name:  ? Phvul.010G157700 Secondary Identifier:  ? PAC:37143728
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G157700 0.5kb upstream 0.5kb upstream 8394 true Chr10: 43641660-43650053 Phaseolus vulgaris
Phvul.010G157700 0.5kb upstream 0.5kb upstream 500 false Chr10: 43649554-43650053 Phaseolus vulgaris
Phvul.010G157700 0.5kb downstream 0.5kb downstream 8394 true Chr10: 43641160-43649553 Phaseolus vulgaris
Phvul.010G157700 0.5kb downstream 0.5kb downstream 500 false Chr10: 43641160-43641659 Phaseolus vulgaris
Phvul.010G157700 1.0kb upstream 1.0kb upstream 8894 true Chr10: 43641660-43650553 Phaseolus vulgaris
Phvul.010G157700 1.0kb upstream 1.0kb upstream 1000 false Chr10: 43649554-43650553 Phaseolus vulgaris
Phvul.010G157700 1.0kb downstream 1.0kb downstream 8894 true Chr10: 43640660-43649553 Phaseolus vulgaris
Phvul.010G157700 1.0kb downstream 1.0kb downstream 1000 false Chr10: 43640660-43641659 Phaseolus vulgaris
Phvul.010G157700 2.0kb upstream 2.0kb upstream 9894 true Chr10: 43641660-43651553 Phaseolus vulgaris
Phvul.010G157700 2.0kb upstream 2.0kb upstream 2000 false Chr10: 43649554-43651553 Phaseolus vulgaris
Phvul.010G157700 2.0kb downstream 2.0kb downstream 9894 true Chr10: 43639660-43649553 Phaseolus vulgaris
Phvul.010G157700 2.0kb downstream 2.0kb downstream 2000 false Chr10: 43639660-43641659 Phaseolus vulgaris
Phvul.010G157700 5.0kb upstream 5.0kb upstream 12894 true Chr10: 43641660-43654553 Phaseolus vulgaris
Phvul.010G157700 5.0kb upstream 5.0kb upstream 5000 false Chr10: 43649554-43654553 Phaseolus vulgaris
Phvul.010G157700 5.0kb downstream 5.0kb downstream 12894 true Chr10: 43636660-43649553 Phaseolus vulgaris
Phvul.010G157700 5.0kb downstream 5.0kb downstream 5000 false Chr10: 43636660-43641659 Phaseolus vulgaris
Phvul.010G157700 10.0kb upstream 10.0kb upstream 17894 true Chr10: 43641660-43659553 Phaseolus vulgaris
Phvul.010G157700 10.0kb upstream 10.0kb upstream 10000 false Chr10: 43649554-43659553 Phaseolus vulgaris
Phvul.010G157700 10.0kb downstream 10.0kb downstream 17894 true Chr10: 43631660-43649553 Phaseolus vulgaris
Phvul.010G157700 10.0kb downstream 10.0kb downstream 10000 false Chr10: 43631660-43641659 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309385 5265 Fabidae View MSA
124063339 5270 Rosid View MSA
123747741 5271 Pentapetalae View MSA
122790823 5272 Eudicot View MSA
122049559 5273 Angiosperm View MSA
121350875 5274 Embryophyte View MSA
123381918 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.8344 0.0 44.2077   Low
cufflinks 32.6422 0.0 133.286    
cufflinks 42.4367 0.0 141.167 High  
cufflinks 19.4433 0.0 63.5673   Low
cufflinks 46.2018 0.0 181.128 High  
cufflinks 41.1113 0.0 176.711 High  
cufflinks 61.1596 0.0 266.468 High  
cufflinks 45.0175 0.0 178.985 High  
cufflinks 64.0708 0.0 277.42 High High
cufflinks 63.1469 0.0 274.159 High High
cufflinks 39.1317 0.0 147.139 High  

0 Strain