Gene : Phvul.006G100400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR24362:SF255 - SERINE/THREONINE-PROTEIN KINASE NEK1 Genomic Order:  999
Name:  ? Phvul.006G100400 Secondary Identifier:  ? PAC:37172505
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G100400 0.5kb upstream 0.5kb upstream 6637 true Chr06: 21081135-21087771 Phaseolus vulgaris
Phvul.006G100400 0.5kb upstream 0.5kb upstream 500 false Chr06: 21081135-21081634 Phaseolus vulgaris
Phvul.006G100400 0.5kb downstream 0.5kb downstream 6637 true Chr06: 21081635-21088271 Phaseolus vulgaris
Phvul.006G100400 0.5kb downstream 0.5kb downstream 500 false Chr06: 21087772-21088271 Phaseolus vulgaris
Phvul.006G100400 1.0kb upstream 1.0kb upstream 7137 true Chr06: 21080635-21087771 Phaseolus vulgaris
Phvul.006G100400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 21080635-21081634 Phaseolus vulgaris
Phvul.006G100400 1.0kb downstream 1.0kb downstream 7137 true Chr06: 21081635-21088771 Phaseolus vulgaris
Phvul.006G100400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 21087772-21088771 Phaseolus vulgaris
Phvul.006G100400 2.0kb upstream 2.0kb upstream 8137 true Chr06: 21079635-21087771 Phaseolus vulgaris
Phvul.006G100400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 21079635-21081634 Phaseolus vulgaris
Phvul.006G100400 2.0kb downstream 2.0kb downstream 8137 true Chr06: 21081635-21089771 Phaseolus vulgaris
Phvul.006G100400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 21087772-21089771 Phaseolus vulgaris
Phvul.006G100400 5.0kb upstream 5.0kb upstream 11137 true Chr06: 21076635-21087771 Phaseolus vulgaris
Phvul.006G100400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 21076635-21081634 Phaseolus vulgaris
Phvul.006G100400 5.0kb downstream 5.0kb downstream 11137 true Chr06: 21081635-21092771 Phaseolus vulgaris
Phvul.006G100400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 21087772-21092771 Phaseolus vulgaris
Phvul.006G100400 10.0kb upstream 10.0kb upstream 16137 true Chr06: 21071635-21087771 Phaseolus vulgaris
Phvul.006G100400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 21071635-21081634 Phaseolus vulgaris
Phvul.006G100400 10.0kb downstream 10.0kb downstream 16137 true Chr06: 21081635-21097771 Phaseolus vulgaris
Phvul.006G100400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 21087772-21097771 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314713 5265 Fabidae View MSA
124070127 5270 Rosid View MSA
123743821 5271 Pentapetalae View MSA
122789481 5272 Eudicot View MSA
122043022 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121310065 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.50735 0.0 7.60544   Low
cufflinks 7.09456 0.0 19.3809    
cufflinks 11.0647 0.0 29.1694   High
cufflinks 3.3578 0.0 9.89481   Low
cufflinks 6.38125 0.0 17.6754    
cufflinks 12.6157 0.0 33.0518   High
cufflinks 6.9981 0.0 19.1418    
cufflinks 5.59692 0.0 15.5661    
cufflinks 11.0502 0.0 29.2202   High
cufflinks 5.35134 0.0 14.9954    
cufflinks 6.82662 0.0 18.7835    

0 Strain