Gene : Phvul.010G149500 P. vulgaris v2.1
Defline:  (1 of 1) K11273 - chromosome transmission fidelity protein 1 [EC:3.6.4.13] (DDX11, CHL1, CTF1) Genomic Order:  1506
Name:  ? Phvul.010G149500 Secondary Identifier:  ? PAC:37143246
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G149500 0.5kb upstream 0.5kb upstream 5563 true Chr10: 43009630-43015192 Phaseolus vulgaris
Phvul.010G149500 0.5kb upstream 0.5kb upstream 500 false Chr10: 43009630-43010129 Phaseolus vulgaris
Phvul.010G149500 0.5kb downstream 0.5kb downstream 5563 true Chr10: 43010130-43015692 Phaseolus vulgaris
Phvul.010G149500 0.5kb downstream 0.5kb downstream 500 false Chr10: 43015193-43015692 Phaseolus vulgaris
Phvul.010G149500 1.0kb upstream 1.0kb upstream 6063 true Chr10: 43009130-43015192 Phaseolus vulgaris
Phvul.010G149500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 43009130-43010129 Phaseolus vulgaris
Phvul.010G149500 1.0kb downstream 1.0kb downstream 6063 true Chr10: 43010130-43016192 Phaseolus vulgaris
Phvul.010G149500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 43015193-43016192 Phaseolus vulgaris
Phvul.010G149500 2.0kb upstream 2.0kb upstream 7063 true Chr10: 43008130-43015192 Phaseolus vulgaris
Phvul.010G149500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 43008130-43010129 Phaseolus vulgaris
Phvul.010G149500 2.0kb downstream 2.0kb downstream 7063 true Chr10: 43010130-43017192 Phaseolus vulgaris
Phvul.010G149500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 43015193-43017192 Phaseolus vulgaris
Phvul.010G149500 5.0kb upstream 5.0kb upstream 10063 true Chr10: 43005130-43015192 Phaseolus vulgaris
Phvul.010G149500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 43005130-43010129 Phaseolus vulgaris
Phvul.010G149500 5.0kb downstream 5.0kb downstream 10063 true Chr10: 43010130-43020192 Phaseolus vulgaris
Phvul.010G149500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 43015193-43020192 Phaseolus vulgaris
Phvul.010G149500 10.0kb upstream 10.0kb upstream 15063 true Chr10: 43000130-43015192 Phaseolus vulgaris
Phvul.010G149500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 43000130-43010129 Phaseolus vulgaris
Phvul.010G149500 10.0kb downstream 10.0kb downstream 15063 true Chr10: 43010130-43025192 Phaseolus vulgaris
Phvul.010G149500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 43015193-43025192 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305473 5265 Fabidae View MSA
124063086 5270 Rosid View MSA
123739060 5271 Pentapetalae View MSA
122791731 5272 Eudicot View MSA
122044733 5273 Angiosperm View MSA
121346490 5274 Embryophyte View MSA
123426390 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.18533 0.0 0.698751 Low  
cufflinks 0.390994 0.0 1.37947 Low  
cufflinks 0.256244 0.0 0.939746 Low  
cufflinks 0.172605 0.0 0.660999 Low  
cufflinks 0.406599 0.0 1.44305 Low  
cufflinks 0.812517 0.0 2.63727   High
cufflinks 0.716038 0.0 2.35494    
cufflinks 0.821092 0.0 2.64671   High
cufflinks 0.755453 0.0 2.47952    
cufflinks 0.0643449 0.0 0.264347 Low Low
cufflinks 0.299179 0.0 1.0874 Low  

0 Strain