Gene : Phvul.006G093200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10252//PTHR10252:SF49 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED // SUBFAMILY NOT NAMED Genomic Order:  926
Name:  ? Phvul.006G093200 Secondary Identifier:  ? PAC:37174158
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G093200 0.5kb upstream 0.5kb upstream 3357 true Chr06: 20442418-20445774 Phaseolus vulgaris
Phvul.006G093200 0.5kb upstream 0.5kb upstream 500 false Chr06: 20445275-20445774 Phaseolus vulgaris
Phvul.006G093200 0.5kb downstream 0.5kb downstream 3357 true Chr06: 20441918-20445274 Phaseolus vulgaris
Phvul.006G093200 0.5kb downstream 0.5kb downstream 500 false Chr06: 20441918-20442417 Phaseolus vulgaris
Phvul.006G093200 1.0kb upstream 1.0kb upstream 3857 true Chr06: 20442418-20446274 Phaseolus vulgaris
Phvul.006G093200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 20445275-20446274 Phaseolus vulgaris
Phvul.006G093200 1.0kb downstream 1.0kb downstream 3857 true Chr06: 20441418-20445274 Phaseolus vulgaris
Phvul.006G093200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 20441418-20442417 Phaseolus vulgaris
Phvul.006G093200 2.0kb upstream 2.0kb upstream 4857 true Chr06: 20442418-20447274 Phaseolus vulgaris
Phvul.006G093200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 20445275-20447274 Phaseolus vulgaris
Phvul.006G093200 2.0kb downstream 2.0kb downstream 4857 true Chr06: 20440418-20445274 Phaseolus vulgaris
Phvul.006G093200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 20440418-20442417 Phaseolus vulgaris
Phvul.006G093200 5.0kb upstream 5.0kb upstream 7857 true Chr06: 20442418-20450274 Phaseolus vulgaris
Phvul.006G093200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 20445275-20450274 Phaseolus vulgaris
Phvul.006G093200 5.0kb downstream 5.0kb downstream 7857 true Chr06: 20437418-20445274 Phaseolus vulgaris
Phvul.006G093200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 20437418-20442417 Phaseolus vulgaris
Phvul.006G093200 10.0kb upstream 10.0kb upstream 12857 true Chr06: 20442418-20455274 Phaseolus vulgaris
Phvul.006G093200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 20445275-20455274 Phaseolus vulgaris
Phvul.006G093200 10.0kb downstream 10.0kb downstream 12857 true Chr06: 20432418-20445274 Phaseolus vulgaris
Phvul.006G093200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 20432418-20442417 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303223 5265 Fabidae View MSA
124071144 5270 Rosid View MSA
123743416 5271 Pentapetalae View MSA
122794744 5272 Eudicot View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 91.7066 0.0 369.656 High High
cufflinks 43.1379 0.0 157.398 High  
cufflinks 31.3365 0.0 112.575   Low
cufflinks 65.4256 0.0 247.056 High  
cufflinks 48.479 0.0 176.483 High  
cufflinks 33.2994 0.0 120.746 High Low
cufflinks 47.4478 0.0 174.858 High  
cufflinks 38.47 0.0 140.049 High  
cufflinks 40.0316 0.0 145.504 High  
cufflinks 63.0832 0.0 236.771 High  
cufflinks 63.0562 0.0 237.448 High  

0 Strain