Gene : Phvul.006G093500 P. vulgaris v2.1
Defline:  (1 of 2) K12948 - signal peptidase complex subunit 3 (SPCS3, SPC3) Genomic Order:  929
Name:  ? Phvul.006G093500 Secondary Identifier:  ? PAC:37172847
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G093500 0.5kb upstream 0.5kb upstream 4051 true Chr06: 20453920-20457970 Phaseolus vulgaris
Phvul.006G093500 0.5kb upstream 0.5kb upstream 500 false Chr06: 20457471-20457970 Phaseolus vulgaris
Phvul.006G093500 0.5kb downstream 0.5kb downstream 4051 true Chr06: 20453420-20457470 Phaseolus vulgaris
Phvul.006G093500 0.5kb downstream 0.5kb downstream 500 false Chr06: 20453420-20453919 Phaseolus vulgaris
Phvul.006G093500 1.0kb upstream 1.0kb upstream 4551 true Chr06: 20453920-20458470 Phaseolus vulgaris
Phvul.006G093500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 20457471-20458470 Phaseolus vulgaris
Phvul.006G093500 1.0kb downstream 1.0kb downstream 4551 true Chr06: 20452920-20457470 Phaseolus vulgaris
Phvul.006G093500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 20452920-20453919 Phaseolus vulgaris
Phvul.006G093500 2.0kb upstream 2.0kb upstream 5551 true Chr06: 20453920-20459470 Phaseolus vulgaris
Phvul.006G093500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 20457471-20459470 Phaseolus vulgaris
Phvul.006G093500 2.0kb downstream 2.0kb downstream 5551 true Chr06: 20451920-20457470 Phaseolus vulgaris
Phvul.006G093500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 20451920-20453919 Phaseolus vulgaris
Phvul.006G093500 5.0kb upstream 5.0kb upstream 8551 true Chr06: 20453920-20462470 Phaseolus vulgaris
Phvul.006G093500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 20457471-20462470 Phaseolus vulgaris
Phvul.006G093500 5.0kb downstream 5.0kb downstream 8551 true Chr06: 20448920-20457470 Phaseolus vulgaris
Phvul.006G093500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 20448920-20453919 Phaseolus vulgaris
Phvul.006G093500 10.0kb upstream 10.0kb upstream 13551 true Chr06: 20453920-20467470 Phaseolus vulgaris
Phvul.006G093500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 20457471-20467470 Phaseolus vulgaris
Phvul.006G093500 10.0kb downstream 10.0kb downstream 13551 true Chr06: 20443920-20457470 Phaseolus vulgaris
Phvul.006G093500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 20443920-20453919 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307448 5265 Fabidae View MSA
124062691 5270 Rosid View MSA
123748290 5271 Pentapetalae View MSA
122794035 5272 Eudicot View MSA
122042946 5273 Angiosperm View MSA
121344173 5274 Embryophyte View MSA
123424952 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.5617 0.0 72.858    
cufflinks 43.9782 0.0 114.006 High High
cufflinks 21.7418 0.0 58.4373    
cufflinks 48.4704 0.0 125.404 High High
cufflinks 25.0933 0.0 67.1319    
cufflinks 21.4454 0.0 57.8093    
cufflinks 20.8399 0.0 56.3083    
cufflinks 26.1438 0.0 69.2256    
cufflinks 25.0771 0.0 66.7751    
cufflinks 16.9202 0.0 46.6069   Low
cufflinks 29.8434 0.0 78.8339    

0 Strain