Gene : Phvul.010G149000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10996//PTHR10996:SF139 - 2-HYDROXYACID DEHYDROGENASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1501
Name:  ? Phvul.010G149000 Secondary Identifier:  ? PAC:37143001
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5049 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G149000 0.5kb upstream 0.5kb upstream 3351 true Chr10: 42976999-42980349 Phaseolus vulgaris
Phvul.010G149000 0.5kb upstream 0.5kb upstream 500 false Chr10: 42976999-42977498 Phaseolus vulgaris
Phvul.010G149000 0.5kb downstream 0.5kb downstream 3351 true Chr10: 42977499-42980849 Phaseolus vulgaris
Phvul.010G149000 0.5kb downstream 0.5kb downstream 500 false Chr10: 42980350-42980849 Phaseolus vulgaris
Phvul.010G149000 1.0kb upstream 1.0kb upstream 3851 true Chr10: 42976499-42980349 Phaseolus vulgaris
Phvul.010G149000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 42976499-42977498 Phaseolus vulgaris
Phvul.010G149000 1.0kb downstream 1.0kb downstream 3851 true Chr10: 42977499-42981349 Phaseolus vulgaris
Phvul.010G149000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 42980350-42981349 Phaseolus vulgaris
Phvul.010G149000 2.0kb upstream 2.0kb upstream 4851 true Chr10: 42975499-42980349 Phaseolus vulgaris
Phvul.010G149000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 42975499-42977498 Phaseolus vulgaris
Phvul.010G149000 2.0kb downstream 2.0kb downstream 4851 true Chr10: 42977499-42982349 Phaseolus vulgaris
Phvul.010G149000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 42980350-42982349 Phaseolus vulgaris
Phvul.010G149000 5.0kb upstream 5.0kb upstream 7851 true Chr10: 42972499-42980349 Phaseolus vulgaris
Phvul.010G149000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 42972499-42977498 Phaseolus vulgaris
Phvul.010G149000 5.0kb downstream 5.0kb downstream 7851 true Chr10: 42977499-42985349 Phaseolus vulgaris
Phvul.010G149000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 42980350-42985349 Phaseolus vulgaris
Phvul.010G149000 10.0kb upstream 10.0kb upstream 12851 true Chr10: 42967499-42980349 Phaseolus vulgaris
Phvul.010G149000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 42967499-42977498 Phaseolus vulgaris
Phvul.010G149000 10.0kb downstream 10.0kb downstream 12851 true Chr10: 42977499-42990349 Phaseolus vulgaris
Phvul.010G149000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 42980350-42990349 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304253 5265 Fabidae View MSA
124066830 5270 Rosid View MSA
123749177 5271 Pentapetalae View MSA
122790806 5272 Eudicot View MSA
122049787 5273 Angiosperm View MSA
121349350 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 89.4035 0.0 247.733 High  
cufflinks 98.0609 0.0 274.441 High  
cufflinks 116.658 0.0 331.522 High  
cufflinks 139.818 0.0 408.014 High High
cufflinks 69.9849 0.0 189.491 High  
cufflinks 112.037 0.0 318.174 High  
cufflinks 24.3877 0.0 63.0388   Low
cufflinks 32.9774 0.0 85.4642 High Low
cufflinks 38.6799 0.0 100.807 High Low
cufflinks 72.6752 0.0 197.468 High  
cufflinks 68.9329 0.0 186.848 High  

0 Strain