Gene : Phvul.010G152800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR32370:SF16 - NON-PHOTOTROPIC HYPOCOTYL-LIKE PROTEIN Genomic Order:  1540
Name:  ? Phvul.010G152800 Secondary Identifier:  ? PAC:37142613
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G152800 0.5kb upstream 0.5kb upstream 3151 true Chr10: 43275084-43278234 Phaseolus vulgaris
Phvul.010G152800 0.5kb upstream 0.5kb upstream 500 false Chr10: 43277735-43278234 Phaseolus vulgaris
Phvul.010G152800 0.5kb downstream 0.5kb downstream 3151 true Chr10: 43274584-43277734 Phaseolus vulgaris
Phvul.010G152800 0.5kb downstream 0.5kb downstream 500 false Chr10: 43274584-43275083 Phaseolus vulgaris
Phvul.010G152800 1.0kb upstream 1.0kb upstream 3651 true Chr10: 43275084-43278734 Phaseolus vulgaris
Phvul.010G152800 1.0kb upstream 1.0kb upstream 1000 false Chr10: 43277735-43278734 Phaseolus vulgaris
Phvul.010G152800 1.0kb downstream 1.0kb downstream 3651 true Chr10: 43274084-43277734 Phaseolus vulgaris
Phvul.010G152800 1.0kb downstream 1.0kb downstream 1000 false Chr10: 43274084-43275083 Phaseolus vulgaris
Phvul.010G152800 2.0kb upstream 2.0kb upstream 4651 true Chr10: 43275084-43279734 Phaseolus vulgaris
Phvul.010G152800 2.0kb upstream 2.0kb upstream 2000 false Chr10: 43277735-43279734 Phaseolus vulgaris
Phvul.010G152800 2.0kb downstream 2.0kb downstream 4651 true Chr10: 43273084-43277734 Phaseolus vulgaris
Phvul.010G152800 2.0kb downstream 2.0kb downstream 2000 false Chr10: 43273084-43275083 Phaseolus vulgaris
Phvul.010G152800 5.0kb upstream 5.0kb upstream 7651 true Chr10: 43275084-43282734 Phaseolus vulgaris
Phvul.010G152800 5.0kb upstream 5.0kb upstream 5000 false Chr10: 43277735-43282734 Phaseolus vulgaris
Phvul.010G152800 5.0kb downstream 5.0kb downstream 7651 true Chr10: 43270084-43277734 Phaseolus vulgaris
Phvul.010G152800 5.0kb downstream 5.0kb downstream 5000 false Chr10: 43270084-43275083 Phaseolus vulgaris
Phvul.010G152800 10.0kb upstream 10.0kb upstream 12651 true Chr10: 43275084-43287734 Phaseolus vulgaris
Phvul.010G152800 10.0kb upstream 10.0kb upstream 10000 false Chr10: 43277735-43287734 Phaseolus vulgaris
Phvul.010G152800 10.0kb downstream 10.0kb downstream 12651 true Chr10: 43265084-43277734 Phaseolus vulgaris
Phvul.010G152800 10.0kb downstream 10.0kb downstream 10000 false Chr10: 43265084-43275083 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313686 5265 Fabidae View MSA
124065820 5270 Rosid View MSA
123742198 5271 Pentapetalae View MSA
122787661 5272 Eudicot View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.65326 0.0 5.28799    
cufflinks 0.262141 0.0 1.00233 Low  
cufflinks 43.7116 0.0 115.574 High High
cufflinks 2.16316 0.0 6.69498    
cufflinks 1.67161 0.0 5.33935    
cufflinks 27.2234 0.0 70.5412   High
cufflinks 0.606657 0.0 2.15039    
cufflinks 0.555861 0.0 1.9933    
cufflinks 0.304798 0.0 1.14725 Low  
cufflinks 0.0167261 0.0 0.0825607 Low Low
cufflinks 2.48809 0.0 7.5661    

0 Strain