Gene : Phvul.006G083600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31852:SF1 - LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED Genomic Order:  821
Name:  ? Phvul.006G083600 Secondary Identifier:  ? PAC:37172957
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G083600 0.5kb upstream 0.5kb upstream 1493 true Chr06: 19557888-19559380 Phaseolus vulgaris
Phvul.006G083600 0.5kb upstream 0.5kb upstream 500 false Chr06: 19557888-19558387 Phaseolus vulgaris
Phvul.006G083600 0.5kb downstream 0.5kb downstream 1493 true Chr06: 19558388-19559880 Phaseolus vulgaris
Phvul.006G083600 0.5kb downstream 0.5kb downstream 500 false Chr06: 19559381-19559880 Phaseolus vulgaris
Phvul.006G083600 1.0kb upstream 1.0kb upstream 1993 true Chr06: 19557388-19559380 Phaseolus vulgaris
Phvul.006G083600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 19557388-19558387 Phaseolus vulgaris
Phvul.006G083600 1.0kb downstream 1.0kb downstream 1993 true Chr06: 19558388-19560380 Phaseolus vulgaris
Phvul.006G083600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19559381-19560380 Phaseolus vulgaris
Phvul.006G083600 2.0kb upstream 2.0kb upstream 2993 true Chr06: 19556388-19559380 Phaseolus vulgaris
Phvul.006G083600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 19556388-19558387 Phaseolus vulgaris
Phvul.006G083600 2.0kb downstream 2.0kb downstream 2993 true Chr06: 19558388-19561380 Phaseolus vulgaris
Phvul.006G083600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19559381-19561380 Phaseolus vulgaris
Phvul.006G083600 5.0kb upstream 5.0kb upstream 5993 true Chr06: 19553388-19559380 Phaseolus vulgaris
Phvul.006G083600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 19553388-19558387 Phaseolus vulgaris
Phvul.006G083600 5.0kb downstream 5.0kb downstream 5993 true Chr06: 19558388-19564380 Phaseolus vulgaris
Phvul.006G083600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19559381-19564380 Phaseolus vulgaris
Phvul.006G083600 10.0kb upstream 10.0kb upstream 10993 true Chr06: 19548388-19559380 Phaseolus vulgaris
Phvul.006G083600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 19548388-19558387 Phaseolus vulgaris
Phvul.006G083600 10.0kb downstream 10.0kb downstream 10993 true Chr06: 19558388-19569380 Phaseolus vulgaris
Phvul.006G083600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19559381-19569380 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313282 5265 Fabidae View MSA
124063776 5270 Rosid View MSA
123751487 5271 Pentapetalae View MSA
122787858 5272 Eudicot View MSA
122044505 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.345082 0.0 1.39824 Low  
cufflinks 0.155777 0.0 0.674266 Low  
cufflinks 0.06919 0.0 0.323166 Low Low
cufflinks 0.301598 0.0 1.23079 Low  
cufflinks 0.297007 0.0 1.22234 Low  
cufflinks 0.53056 0.0 2.0716 Low  
cufflinks 10.187 0.0 29.4627   High
cufflinks 5.47667 0.0 16.9712   High
cufflinks 8.03652 0.0 23.7807   High
cufflinks 0.557574 0.0 2.17565    
cufflinks 0.344868 0.0 1.39839 Low  

0 Strain