Gene : Phvul.006G089500 P. vulgaris v2.1
Defline:  (1 of 1) K10364 - capping protein (actin filament) muscle Z-line, alpha (CAPZA) Genomic Order:  886
Name:  ? Phvul.006G089500 Secondary Identifier:  ? PAC:37172029
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G089500 0.5kb upstream 0.5kb upstream 4105 true Chr06: 20106331-20110435 Phaseolus vulgaris
Phvul.006G089500 0.5kb upstream 0.5kb upstream 500 false Chr06: 20109936-20110435 Phaseolus vulgaris
Phvul.006G089500 0.5kb downstream 0.5kb downstream 4105 true Chr06: 20105831-20109935 Phaseolus vulgaris
Phvul.006G089500 0.5kb downstream 0.5kb downstream 500 false Chr06: 20105831-20106330 Phaseolus vulgaris
Phvul.006G089500 1.0kb upstream 1.0kb upstream 4605 true Chr06: 20106331-20110935 Phaseolus vulgaris
Phvul.006G089500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 20109936-20110935 Phaseolus vulgaris
Phvul.006G089500 1.0kb downstream 1.0kb downstream 4605 true Chr06: 20105331-20109935 Phaseolus vulgaris
Phvul.006G089500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 20105331-20106330 Phaseolus vulgaris
Phvul.006G089500 2.0kb upstream 2.0kb upstream 5605 true Chr06: 20106331-20111935 Phaseolus vulgaris
Phvul.006G089500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 20109936-20111935 Phaseolus vulgaris
Phvul.006G089500 2.0kb downstream 2.0kb downstream 5605 true Chr06: 20104331-20109935 Phaseolus vulgaris
Phvul.006G089500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 20104331-20106330 Phaseolus vulgaris
Phvul.006G089500 5.0kb upstream 5.0kb upstream 8605 true Chr06: 20106331-20114935 Phaseolus vulgaris
Phvul.006G089500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 20109936-20114935 Phaseolus vulgaris
Phvul.006G089500 5.0kb downstream 5.0kb downstream 8605 true Chr06: 20101331-20109935 Phaseolus vulgaris
Phvul.006G089500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 20101331-20106330 Phaseolus vulgaris
Phvul.006G089500 10.0kb upstream 10.0kb upstream 13605 true Chr06: 20106331-20119935 Phaseolus vulgaris
Phvul.006G089500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 20109936-20119935 Phaseolus vulgaris
Phvul.006G089500 10.0kb downstream 10.0kb downstream 13605 true Chr06: 20096331-20109935 Phaseolus vulgaris
Phvul.006G089500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 20096331-20106330 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308271 5265 Fabidae View MSA
124063907 5270 Rosid View MSA
123748268 5271 Pentapetalae View MSA
122793557 5272 Eudicot View MSA
122047118 5273 Angiosperm View MSA
121348843 5274 Embryophyte View MSA
123381036 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.3371 0.0 65.7465    
cufflinks 32.5383 0.0 84.1163    
cufflinks 57.7574 0.0 151.163 High High
cufflinks 29.7066 0.0 76.8724    
cufflinks 34.2173 0.0 88.4549 High  
cufflinks 37.961 0.0 98.1686 High  
cufflinks 24.2721 0.0 63.0315    
cufflinks 28.7576 0.0 74.3937 High  
cufflinks 28.0012 0.0 72.5053    
cufflinks 20.9309 0.0 54.7576   Low
cufflinks 37.1271 0.0 95.9731 High  

0 Strain