Gene : Phvul.006G072500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31165:SF6 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Genomic Order:  710
Name:  ? Phvul.006G072500 Secondary Identifier:  ? PAC:37174228
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G072500 0.5kb upstream 0.5kb upstream 1472 true Chr06: 18527787-18529258 Phaseolus vulgaris
Phvul.006G072500 0.5kb upstream 0.5kb upstream 500 false Chr06: 18527787-18528286 Phaseolus vulgaris
Phvul.006G072500 0.5kb downstream 0.5kb downstream 1472 true Chr06: 18528287-18529758 Phaseolus vulgaris
Phvul.006G072500 0.5kb downstream 0.5kb downstream 500 false Chr06: 18529259-18529758 Phaseolus vulgaris
Phvul.006G072500 1.0kb upstream 1.0kb upstream 1972 true Chr06: 18527287-18529258 Phaseolus vulgaris
Phvul.006G072500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 18527287-18528286 Phaseolus vulgaris
Phvul.006G072500 1.0kb downstream 1.0kb downstream 1972 true Chr06: 18528287-18530258 Phaseolus vulgaris
Phvul.006G072500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 18529259-18530258 Phaseolus vulgaris
Phvul.006G072500 2.0kb upstream 2.0kb upstream 2972 true Chr06: 18526287-18529258 Phaseolus vulgaris
Phvul.006G072500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 18526287-18528286 Phaseolus vulgaris
Phvul.006G072500 2.0kb downstream 2.0kb downstream 2972 true Chr06: 18528287-18531258 Phaseolus vulgaris
Phvul.006G072500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 18529259-18531258 Phaseolus vulgaris
Phvul.006G072500 5.0kb upstream 5.0kb upstream 5972 true Chr06: 18523287-18529258 Phaseolus vulgaris
Phvul.006G072500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 18523287-18528286 Phaseolus vulgaris
Phvul.006G072500 5.0kb downstream 5.0kb downstream 5972 true Chr06: 18528287-18534258 Phaseolus vulgaris
Phvul.006G072500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 18529259-18534258 Phaseolus vulgaris
Phvul.006G072500 10.0kb upstream 10.0kb upstream 10972 true Chr06: 18518287-18529258 Phaseolus vulgaris
Phvul.006G072500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 18518287-18528286 Phaseolus vulgaris
Phvul.006G072500 10.0kb downstream 10.0kb downstream 10972 true Chr06: 18528287-18539258 Phaseolus vulgaris
Phvul.006G072500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 18529259-18539258 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310216 5265 Fabidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.8957 0.0 30.9792    
cufflinks 15.25 0.0 41.9854    
cufflinks 1.30106 0.0 4.67615   Low
cufflinks 3.66756 0.0 11.6229    
cufflinks 19.6077 0.0 52.7708    
cufflinks 0.898591 0.0 3.33216   Low
cufflinks 8.64265 0.0 24.8672    
cufflinks 2.22634 0.0 7.52835    
cufflinks 6.32658 0.0 18.7999    
cufflinks 46.471 0.0 120.205 High High
cufflinks 12.6393 0.0 35.3231    

0 Strain