Gene : Phvul.006G078200 P. vulgaris v2.1
Defline:  (1 of 16) PTHR21717 - TELOMERIC REPEAT BINDING PROTEIN Genomic Order:  767
Name:  ? Phvul.006G078200 Secondary Identifier:  ? PAC:37172043
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G078200 0.5kb upstream 0.5kb upstream 6946 true Chr06: 18997180-19004125 Phaseolus vulgaris
Phvul.006G078200 0.5kb upstream 0.5kb upstream 500 false Chr06: 18997180-18997679 Phaseolus vulgaris
Phvul.006G078200 0.5kb downstream 0.5kb downstream 6946 true Chr06: 18997680-19004625 Phaseolus vulgaris
Phvul.006G078200 0.5kb downstream 0.5kb downstream 500 false Chr06: 19004126-19004625 Phaseolus vulgaris
Phvul.006G078200 1.0kb upstream 1.0kb upstream 7446 true Chr06: 18996680-19004125 Phaseolus vulgaris
Phvul.006G078200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 18996680-18997679 Phaseolus vulgaris
Phvul.006G078200 1.0kb downstream 1.0kb downstream 7446 true Chr06: 18997680-19005125 Phaseolus vulgaris
Phvul.006G078200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19004126-19005125 Phaseolus vulgaris
Phvul.006G078200 2.0kb upstream 2.0kb upstream 8446 true Chr06: 18995680-19004125 Phaseolus vulgaris
Phvul.006G078200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 18995680-18997679 Phaseolus vulgaris
Phvul.006G078200 2.0kb downstream 2.0kb downstream 8446 true Chr06: 18997680-19006125 Phaseolus vulgaris
Phvul.006G078200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19004126-19006125 Phaseolus vulgaris
Phvul.006G078200 5.0kb upstream 5.0kb upstream 11446 true Chr06: 18992680-19004125 Phaseolus vulgaris
Phvul.006G078200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 18992680-18997679 Phaseolus vulgaris
Phvul.006G078200 5.0kb downstream 5.0kb downstream 11446 true Chr06: 18997680-19009125 Phaseolus vulgaris
Phvul.006G078200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19004126-19009125 Phaseolus vulgaris
Phvul.006G078200 10.0kb upstream 10.0kb upstream 16446 true Chr06: 18987680-19004125 Phaseolus vulgaris
Phvul.006G078200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 18987680-18997679 Phaseolus vulgaris
Phvul.006G078200 10.0kb downstream 10.0kb downstream 16446 true Chr06: 18997680-19014125 Phaseolus vulgaris
Phvul.006G078200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19004126-19014125 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314491 5265 Fabidae View MSA
124067542 5270 Rosid View MSA
123751765 5271 Pentapetalae View MSA
122796417 5272 Eudicot View MSA
122048444 5273 Angiosperm View MSA
121347141 5274 Embryophyte View MSA
123425851 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.96345 0.0 11.2966   Low
cufflinks 5.63146 0.0 15.5781    
cufflinks 8.34622 0.0 22.3996   High
cufflinks 4.71757 0.0 13.2826   Low
cufflinks 6.16421 0.0 16.9264    
cufflinks 6.8489 0.0 18.6287    
cufflinks 6.88896 0.0 18.6103    
cufflinks 6.29022 0.0 17.1667    
cufflinks 6.63764 0.0 18.0267    
cufflinks 7.84817 0.0 21.0946   High
cufflinks 6.14949 0.0 16.8476    

0 Strain