Gene : Phvul.006G077300 P. vulgaris v2.1
Defline:  (1 of 1) KOG3369 - Transport protein particle (TRAPP) complex subunit Genomic Order:  758
Name:  ? Phvul.006G077300 Secondary Identifier:  ? PAC:37172278
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G077300 0.5kb upstream 0.5kb upstream 3414 true Chr06: 18924360-18927773 Phaseolus vulgaris
Phvul.006G077300 0.5kb upstream 0.5kb upstream 500 false Chr06: 18927274-18927773 Phaseolus vulgaris
Phvul.006G077300 0.5kb downstream 0.5kb downstream 3414 true Chr06: 18923860-18927273 Phaseolus vulgaris
Phvul.006G077300 0.5kb downstream 0.5kb downstream 500 false Chr06: 18923860-18924359 Phaseolus vulgaris
Phvul.006G077300 1.0kb upstream 1.0kb upstream 3914 true Chr06: 18924360-18928273 Phaseolus vulgaris
Phvul.006G077300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 18927274-18928273 Phaseolus vulgaris
Phvul.006G077300 1.0kb downstream 1.0kb downstream 3914 true Chr06: 18923360-18927273 Phaseolus vulgaris
Phvul.006G077300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 18923360-18924359 Phaseolus vulgaris
Phvul.006G077300 2.0kb upstream 2.0kb upstream 4914 true Chr06: 18924360-18929273 Phaseolus vulgaris
Phvul.006G077300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 18927274-18929273 Phaseolus vulgaris
Phvul.006G077300 2.0kb downstream 2.0kb downstream 4914 true Chr06: 18922360-18927273 Phaseolus vulgaris
Phvul.006G077300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 18922360-18924359 Phaseolus vulgaris
Phvul.006G077300 5.0kb upstream 5.0kb upstream 7914 true Chr06: 18924360-18932273 Phaseolus vulgaris
Phvul.006G077300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 18927274-18932273 Phaseolus vulgaris
Phvul.006G077300 5.0kb downstream 5.0kb downstream 7914 true Chr06: 18919360-18927273 Phaseolus vulgaris
Phvul.006G077300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 18919360-18924359 Phaseolus vulgaris
Phvul.006G077300 10.0kb upstream 10.0kb upstream 12914 true Chr06: 18924360-18937273 Phaseolus vulgaris
Phvul.006G077300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 18927274-18937273 Phaseolus vulgaris
Phvul.006G077300 10.0kb downstream 10.0kb downstream 12914 true Chr06: 18914360-18927273 Phaseolus vulgaris
Phvul.006G077300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 18914360-18924359 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312877 5265 Fabidae View MSA
124062773 5270 Rosid View MSA
123740967 5271 Pentapetalae View MSA
122786625 5272 Eudicot View MSA
122043161 5273 Angiosperm View MSA
121347078 5274 Embryophyte View MSA
123424121 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4085 0.0 29.8546   Low
cufflinks 14.1437 0.0 39.5256    
cufflinks 15.8621 0.0 43.944    
cufflinks 32.1681 0.0 84.2804   High
cufflinks 18.8849 0.0 51.5034    
cufflinks 11.4847 0.0 32.7695    
cufflinks 11.0375 0.0 31.6048    
cufflinks 12.3273 0.0 34.8835    
cufflinks 13.5626 0.0 38.1295    
cufflinks 13.5116 0.0 37.836    
cufflinks 22.1898 0.0 59.734   High

0 Strain