Gene : Phvul.006G080000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31194//PTHR31194:SF6 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR // SUBFAMILY NOT NAMED Genomic Order:  785
Name:  ? Phvul.006G080000 Secondary Identifier:  ? PAC:37172379
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G080000 0.5kb upstream 0.5kb upstream 1770 true Chr06: 19194544-19196313 Phaseolus vulgaris
Phvul.006G080000 0.5kb upstream 0.5kb upstream 500 false Chr06: 19195814-19196313 Phaseolus vulgaris
Phvul.006G080000 0.5kb downstream 0.5kb downstream 1770 true Chr06: 19194044-19195813 Phaseolus vulgaris
Phvul.006G080000 0.5kb downstream 0.5kb downstream 500 false Chr06: 19194044-19194543 Phaseolus vulgaris
Phvul.006G080000 1.0kb upstream 1.0kb upstream 2270 true Chr06: 19194544-19196813 Phaseolus vulgaris
Phvul.006G080000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 19195814-19196813 Phaseolus vulgaris
Phvul.006G080000 1.0kb downstream 1.0kb downstream 2270 true Chr06: 19193544-19195813 Phaseolus vulgaris
Phvul.006G080000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 19193544-19194543 Phaseolus vulgaris
Phvul.006G080000 2.0kb upstream 2.0kb upstream 3270 true Chr06: 19194544-19197813 Phaseolus vulgaris
Phvul.006G080000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 19195814-19197813 Phaseolus vulgaris
Phvul.006G080000 2.0kb downstream 2.0kb downstream 3270 true Chr06: 19192544-19195813 Phaseolus vulgaris
Phvul.006G080000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 19192544-19194543 Phaseolus vulgaris
Phvul.006G080000 5.0kb upstream 5.0kb upstream 6270 true Chr06: 19194544-19200813 Phaseolus vulgaris
Phvul.006G080000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 19195814-19200813 Phaseolus vulgaris
Phvul.006G080000 5.0kb downstream 5.0kb downstream 6270 true Chr06: 19189544-19195813 Phaseolus vulgaris
Phvul.006G080000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 19189544-19194543 Phaseolus vulgaris
Phvul.006G080000 10.0kb upstream 10.0kb upstream 11270 true Chr06: 19194544-19205813 Phaseolus vulgaris
Phvul.006G080000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 19195814-19205813 Phaseolus vulgaris
Phvul.006G080000 10.0kb downstream 10.0kb downstream 11270 true Chr06: 19184544-19195813 Phaseolus vulgaris
Phvul.006G080000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 19184544-19194543 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296641 5265 Fabidae View MSA
124071112 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0889 0.0 35.4893   High
cufflinks 18.7789 0.0 49.7705   High
cufflinks 3.91367 0.0 12.1133    
cufflinks 3.02637 0.0 9.42663    
cufflinks 7.01017 0.0 19.9801    
cufflinks 6.88271 0.0 19.9011    
cufflinks 3.11885 0.0 9.74446    
cufflinks 1.80213 0.0 6.06673   Low
cufflinks 3.32108 0.0 10.3081    
cufflinks 2.84817 0.0 9.1141    
cufflinks 10.5075 0.0 28.9485    

0 Strain