Gene : Phvul.010G123900 P. vulgaris v2.1
Defline:  (1 of 13) PF01388 - ARID/BRIGHT DNA binding domain (ARID) Genomic Order:  1245
Name:  ? Phvul.010G123900 Secondary Identifier:  ? PAC:37144309
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G123900 0.5kb upstream 0.5kb upstream 8736 true Chr10: 40480603-40489338 Phaseolus vulgaris
Phvul.010G123900 0.5kb upstream 0.5kb upstream 500 false Chr10: 40488839-40489338 Phaseolus vulgaris
Phvul.010G123900 0.5kb downstream 0.5kb downstream 8736 true Chr10: 40480103-40488838 Phaseolus vulgaris
Phvul.010G123900 0.5kb downstream 0.5kb downstream 500 false Chr10: 40480103-40480602 Phaseolus vulgaris
Phvul.010G123900 1.0kb upstream 1.0kb upstream 9236 true Chr10: 40480603-40489838 Phaseolus vulgaris
Phvul.010G123900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 40488839-40489838 Phaseolus vulgaris
Phvul.010G123900 1.0kb downstream 1.0kb downstream 9236 true Chr10: 40479603-40488838 Phaseolus vulgaris
Phvul.010G123900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40479603-40480602 Phaseolus vulgaris
Phvul.010G123900 2.0kb upstream 2.0kb upstream 10236 true Chr10: 40480603-40490838 Phaseolus vulgaris
Phvul.010G123900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 40488839-40490838 Phaseolus vulgaris
Phvul.010G123900 2.0kb downstream 2.0kb downstream 10236 true Chr10: 40478603-40488838 Phaseolus vulgaris
Phvul.010G123900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40478603-40480602 Phaseolus vulgaris
Phvul.010G123900 5.0kb upstream 5.0kb upstream 13236 true Chr10: 40480603-40493838 Phaseolus vulgaris
Phvul.010G123900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 40488839-40493838 Phaseolus vulgaris
Phvul.010G123900 5.0kb downstream 5.0kb downstream 13236 true Chr10: 40475603-40488838 Phaseolus vulgaris
Phvul.010G123900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40475603-40480602 Phaseolus vulgaris
Phvul.010G123900 10.0kb upstream 10.0kb upstream 18236 true Chr10: 40480603-40498838 Phaseolus vulgaris
Phvul.010G123900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 40488839-40498838 Phaseolus vulgaris
Phvul.010G123900 10.0kb downstream 10.0kb downstream 18236 true Chr10: 40470603-40488838 Phaseolus vulgaris
Phvul.010G123900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40470603-40480602 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305200 5265 Fabidae View MSA
124071086 5270 Rosid View MSA
123740684 5271 Pentapetalae View MSA
122786718 5272 Eudicot View MSA
122047825 5273 Angiosperm View MSA
123428877 5275 Viridiplantae View MSA
121349653 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.75596 0.0 20.4303    
cufflinks 10.1794 0.0 26.4858    
cufflinks 8.84928 0.0 23.1382    
cufflinks 4.40041 0.0 12.1632   Low
cufflinks 7.22758 0.0 19.1922    
cufflinks 9.56598 0.0 24.9412    
cufflinks 8.98733 0.0 23.4899    
cufflinks 8.05654 0.0 21.14    
cufflinks 7.23507 0.0 19.1915    
cufflinks 14.01 0.0 36.221   High
cufflinks 8.05349 0.0 21.2311    

0 Strain