Gene : Phvul.006G062900 P. vulgaris v2.1
Defline:  (1 of 3) K03120 - transcription initiation factor TFIID TATA-box-binding protein (TBP, tbp) Genomic Order:  601
Name:  ? Phvul.006G062900 Secondary Identifier:  ? PAC:37171776
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G062900 0.5kb upstream 0.5kb upstream 4577 true Chr06: 17181206-17185782 Phaseolus vulgaris
Phvul.006G062900 0.5kb upstream 0.5kb upstream 500 false Chr06: 17185283-17185782 Phaseolus vulgaris
Phvul.006G062900 0.5kb downstream 0.5kb downstream 4577 true Chr06: 17180706-17185282 Phaseolus vulgaris
Phvul.006G062900 0.5kb downstream 0.5kb downstream 500 false Chr06: 17180706-17181205 Phaseolus vulgaris
Phvul.006G062900 1.0kb upstream 1.0kb upstream 5077 true Chr06: 17181206-17186282 Phaseolus vulgaris
Phvul.006G062900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 17185283-17186282 Phaseolus vulgaris
Phvul.006G062900 1.0kb downstream 1.0kb downstream 5077 true Chr06: 17180206-17185282 Phaseolus vulgaris
Phvul.006G062900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 17180206-17181205 Phaseolus vulgaris
Phvul.006G062900 2.0kb upstream 2.0kb upstream 6077 true Chr06: 17181206-17187282 Phaseolus vulgaris
Phvul.006G062900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 17185283-17187282 Phaseolus vulgaris
Phvul.006G062900 2.0kb downstream 2.0kb downstream 6077 true Chr06: 17179206-17185282 Phaseolus vulgaris
Phvul.006G062900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 17179206-17181205 Phaseolus vulgaris
Phvul.006G062900 5.0kb upstream 5.0kb upstream 9077 true Chr06: 17181206-17190282 Phaseolus vulgaris
Phvul.006G062900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 17185283-17190282 Phaseolus vulgaris
Phvul.006G062900 5.0kb downstream 5.0kb downstream 9077 true Chr06: 17176206-17185282 Phaseolus vulgaris
Phvul.006G062900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 17176206-17181205 Phaseolus vulgaris
Phvul.006G062900 10.0kb upstream 10.0kb upstream 14077 true Chr06: 17181206-17195282 Phaseolus vulgaris
Phvul.006G062900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 17185283-17195282 Phaseolus vulgaris
Phvul.006G062900 10.0kb downstream 10.0kb downstream 14077 true Chr06: 17171206-17185282 Phaseolus vulgaris
Phvul.006G062900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 17171206-17181205 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300671 5265 Fabidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.3905 0.0 27.4432   High
cufflinks 3.84764 0.0 17.2055   Low
cufflinks 4.4112 0.0 18.4183    
cufflinks 5.85406 0.0 23.137    
cufflinks 4.37895 0.0 18.9495    
cufflinks 3.97668 0.0 17.1842   Low
cufflinks 4.64 0.0 20.52    
cufflinks 5.84483 0.0 18.365    
cufflinks 5.91216 0.0 23.599    
cufflinks 5.3835 0.0 21.844    
cufflinks 5.18211 0.0 21.9499    

0 Strain