Gene : Phvul.010G127200 P. vulgaris v2.1
Defline:  (1 of 2) K03025 - DNA-directed RNA polymerase III subunit RPC6 (RPC6, POLR3F) Genomic Order:  1277
Name:  ? Phvul.010G127200 Secondary Identifier:  ? PAC:37143218
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G127200 0.5kb upstream 0.5kb upstream 2500 true Chr10: 40797513-40800012 Phaseolus vulgaris
Phvul.010G127200 0.5kb upstream 0.5kb upstream 500 false Chr10: 40799513-40800012 Phaseolus vulgaris
Phvul.010G127200 0.5kb downstream 0.5kb downstream 2500 true Chr10: 40797013-40799512 Phaseolus vulgaris
Phvul.010G127200 0.5kb downstream 0.5kb downstream 500 false Chr10: 40797013-40797512 Phaseolus vulgaris
Phvul.010G127200 1.0kb upstream 1.0kb upstream 3000 true Chr10: 40797513-40800512 Phaseolus vulgaris
Phvul.010G127200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 40799513-40800512 Phaseolus vulgaris
Phvul.010G127200 1.0kb downstream 1.0kb downstream 3000 true Chr10: 40796513-40799512 Phaseolus vulgaris
Phvul.010G127200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40796513-40797512 Phaseolus vulgaris
Phvul.010G127200 2.0kb upstream 2.0kb upstream 4000 true Chr10: 40797513-40801512 Phaseolus vulgaris
Phvul.010G127200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 40799513-40801512 Phaseolus vulgaris
Phvul.010G127200 2.0kb downstream 2.0kb downstream 4000 true Chr10: 40795513-40799512 Phaseolus vulgaris
Phvul.010G127200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40795513-40797512 Phaseolus vulgaris
Phvul.010G127200 5.0kb upstream 5.0kb upstream 7000 true Chr10: 40797513-40804512 Phaseolus vulgaris
Phvul.010G127200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 40799513-40804512 Phaseolus vulgaris
Phvul.010G127200 5.0kb downstream 5.0kb downstream 7000 true Chr10: 40792513-40799512 Phaseolus vulgaris
Phvul.010G127200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40792513-40797512 Phaseolus vulgaris
Phvul.010G127200 10.0kb upstream 10.0kb upstream 12000 true Chr10: 40797513-40809512 Phaseolus vulgaris
Phvul.010G127200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 40799513-40809512 Phaseolus vulgaris
Phvul.010G127200 10.0kb downstream 10.0kb downstream 12000 true Chr10: 40787513-40799512 Phaseolus vulgaris
Phvul.010G127200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40787513-40797512 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254380 5265 Fabidae View MSA
123996565 5270 Rosid View MSA
123571008 5271 Pentapetalae View MSA
122605740 5272 Eudicot View MSA
122046766 5273 Angiosperm View MSA
121344415 5274 Embryophyte View MSA
123425900 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.09577 0.0 20.2315    
cufflinks 7.85888 0.0 22.2022   High
cufflinks 8.82355 0.0 24.697   High
cufflinks 7.34104 0.0 20.9806    
cufflinks 6.2673 0.0 18.2143    
cufflinks 5.96104 0.0 17.3263    
cufflinks 6.53425 0.0 18.7342    
cufflinks 5.26731 0.0 15.4536   Low
cufflinks 6.28264 0.0 18.1051    
cufflinks 7.33732 0.0 20.8781    
cufflinks 6.76554 0.0 19.4316    

0 Strain