Gene : Phvul.006G068100 P. vulgaris v2.1
Defline:  (1 of 4) KOG2401 - Predicted MutS-related protein involved in mismatch repair Genomic Order:  665
Name:  ? Phvul.006G068100 Secondary Identifier:  ? PAC:37174192
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G068100 0.5kb upstream 0.5kb upstream 7711 true Chr06: 17949935-17957645 Phaseolus vulgaris
Phvul.006G068100 0.5kb upstream 0.5kb upstream 500 false Chr06: 17949935-17950434 Phaseolus vulgaris
Phvul.006G068100 0.5kb downstream 0.5kb downstream 7711 true Chr06: 17950435-17958145 Phaseolus vulgaris
Phvul.006G068100 0.5kb downstream 0.5kb downstream 500 false Chr06: 17957646-17958145 Phaseolus vulgaris
Phvul.006G068100 1.0kb upstream 1.0kb upstream 8211 true Chr06: 17949435-17957645 Phaseolus vulgaris
Phvul.006G068100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 17949435-17950434 Phaseolus vulgaris
Phvul.006G068100 1.0kb downstream 1.0kb downstream 8211 true Chr06: 17950435-17958645 Phaseolus vulgaris
Phvul.006G068100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 17957646-17958645 Phaseolus vulgaris
Phvul.006G068100 2.0kb upstream 2.0kb upstream 9211 true Chr06: 17948435-17957645 Phaseolus vulgaris
Phvul.006G068100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 17948435-17950434 Phaseolus vulgaris
Phvul.006G068100 2.0kb downstream 2.0kb downstream 9211 true Chr06: 17950435-17959645 Phaseolus vulgaris
Phvul.006G068100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 17957646-17959645 Phaseolus vulgaris
Phvul.006G068100 5.0kb upstream 5.0kb upstream 12211 true Chr06: 17945435-17957645 Phaseolus vulgaris
Phvul.006G068100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 17945435-17950434 Phaseolus vulgaris
Phvul.006G068100 5.0kb downstream 5.0kb downstream 12211 true Chr06: 17950435-17962645 Phaseolus vulgaris
Phvul.006G068100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 17957646-17962645 Phaseolus vulgaris
Phvul.006G068100 10.0kb upstream 10.0kb upstream 17211 true Chr06: 17940435-17957645 Phaseolus vulgaris
Phvul.006G068100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 17940435-17950434 Phaseolus vulgaris
Phvul.006G068100 10.0kb downstream 10.0kb downstream 17211 true Chr06: 17950435-17967645 Phaseolus vulgaris
Phvul.006G068100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 17957646-17967645 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307637 5265 Fabidae View MSA
124073935 5270 Rosid View MSA
123747200 5271 Pentapetalae View MSA
122786859 5272 Eudicot View MSA
122050833 5273 Angiosperm View MSA
121348139 5274 Embryophyte View MSA
123428671 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.7142 0.0 43.2033    
cufflinks 13.8095 0.0 35.7829   Low
cufflinks 20.5003 0.0 53.0563   High
cufflinks 11.5164 0.0 30.1286   Low
cufflinks 15.9031 0.0 41.1523    
cufflinks 18.1818 0.0 47.0009    
cufflinks 18.1732 0.0 46.9924    
cufflinks 18.7113 0.0 48.4047    
cufflinks 15.527 0.0 40.1558    
cufflinks 17.4353 0.0 45.0691    
cufflinks 17.9324 0.0 46.3518    

0 Strain