Gene : Phvul.006G191800 P. vulgaris v2.1
Defline:  (1 of 2) K04718 - sphingosine kinase (SPHK) Genomic Order:  1932
Name:  ? Phvul.006G191800 Secondary Identifier:  ? PAC:37172073
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5129 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6483 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G191800 0.5kb upstream 0.5kb upstream 5301 true Chr06: 29150495-29155795 Phaseolus vulgaris
Phvul.006G191800 0.5kb upstream 0.5kb upstream 500 false Chr06: 29155296-29155795 Phaseolus vulgaris
Phvul.006G191800 0.5kb downstream 0.5kb downstream 5301 true Chr06: 29149995-29155295 Phaseolus vulgaris
Phvul.006G191800 0.5kb downstream 0.5kb downstream 500 false Chr06: 29149995-29150494 Phaseolus vulgaris
Phvul.006G191800 1.0kb upstream 1.0kb upstream 5801 true Chr06: 29150495-29156295 Phaseolus vulgaris
Phvul.006G191800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 29155296-29156295 Phaseolus vulgaris
Phvul.006G191800 1.0kb downstream 1.0kb downstream 5801 true Chr06: 29149495-29155295 Phaseolus vulgaris
Phvul.006G191800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 29149495-29150494 Phaseolus vulgaris
Phvul.006G191800 2.0kb upstream 2.0kb upstream 6801 true Chr06: 29150495-29157295 Phaseolus vulgaris
Phvul.006G191800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 29155296-29157295 Phaseolus vulgaris
Phvul.006G191800 2.0kb downstream 2.0kb downstream 6801 true Chr06: 29148495-29155295 Phaseolus vulgaris
Phvul.006G191800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 29148495-29150494 Phaseolus vulgaris
Phvul.006G191800 5.0kb upstream 5.0kb upstream 9801 true Chr06: 29150495-29160295 Phaseolus vulgaris
Phvul.006G191800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 29155296-29160295 Phaseolus vulgaris
Phvul.006G191800 5.0kb downstream 5.0kb downstream 9801 true Chr06: 29145495-29155295 Phaseolus vulgaris
Phvul.006G191800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 29145495-29150494 Phaseolus vulgaris
Phvul.006G191800 10.0kb upstream 10.0kb upstream 14801 true Chr06: 29150495-29165295 Phaseolus vulgaris
Phvul.006G191800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 29155296-29165295 Phaseolus vulgaris
Phvul.006G191800 10.0kb downstream 10.0kb downstream 14801 true Chr06: 29140495-29155295 Phaseolus vulgaris
Phvul.006G191800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 29140495-29150494 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314274 5265 Fabidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.89576 0.0 21.4495    
cufflinks 6.04729 0.0 16.8362    
cufflinks 6.042 0.0 16.8152    
cufflinks 4.3499 0.0 12.5793   Low
cufflinks 7.48017 0.0 20.519    
cufflinks 4.54086 0.0 12.9748   Low
cufflinks 5.60346 0.0 15.6844    
cufflinks 9.81589 0.0 26.1759   High
cufflinks 6.72781 0.0 18.5496    
cufflinks 9.92284 0.0 26.4846   High
cufflinks 5.24169 0.0 14.8157    

0 Strain