Gene : Phvul.006G192400 P. vulgaris v2.1
Defline:  (1 of 1) PF00036//PF00070 - EF hand (EF-hand_1) // Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox) Genomic Order:  1938
Name:  ? Phvul.006G192400 Secondary Identifier:  ? PAC:37174249
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7279 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G192400 0.5kb upstream 0.5kb upstream 6367 true Chr06: 29198051-29204417 Phaseolus vulgaris
Phvul.006G192400 0.5kb upstream 0.5kb upstream 500 false Chr06: 29198051-29198550 Phaseolus vulgaris
Phvul.006G192400 0.5kb downstream 0.5kb downstream 6367 true Chr06: 29198551-29204917 Phaseolus vulgaris
Phvul.006G192400 0.5kb downstream 0.5kb downstream 500 false Chr06: 29204418-29204917 Phaseolus vulgaris
Phvul.006G192400 1.0kb upstream 1.0kb upstream 6867 true Chr06: 29197551-29204417 Phaseolus vulgaris
Phvul.006G192400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 29197551-29198550 Phaseolus vulgaris
Phvul.006G192400 1.0kb downstream 1.0kb downstream 6867 true Chr06: 29198551-29205417 Phaseolus vulgaris
Phvul.006G192400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 29204418-29205417 Phaseolus vulgaris
Phvul.006G192400 2.0kb upstream 2.0kb upstream 7867 true Chr06: 29196551-29204417 Phaseolus vulgaris
Phvul.006G192400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 29196551-29198550 Phaseolus vulgaris
Phvul.006G192400 2.0kb downstream 2.0kb downstream 7867 true Chr06: 29198551-29206417 Phaseolus vulgaris
Phvul.006G192400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 29204418-29206417 Phaseolus vulgaris
Phvul.006G192400 5.0kb upstream 5.0kb upstream 10867 true Chr06: 29193551-29204417 Phaseolus vulgaris
Phvul.006G192400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 29193551-29198550 Phaseolus vulgaris
Phvul.006G192400 5.0kb downstream 5.0kb downstream 10867 true Chr06: 29198551-29209417 Phaseolus vulgaris
Phvul.006G192400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 29204418-29209417 Phaseolus vulgaris
Phvul.006G192400 10.0kb upstream 10.0kb upstream 15867 true Chr06: 29188551-29204417 Phaseolus vulgaris
Phvul.006G192400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 29188551-29198550 Phaseolus vulgaris
Phvul.006G192400 10.0kb downstream 10.0kb downstream 15867 true Chr06: 29198551-29214417 Phaseolus vulgaris
Phvul.006G192400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 29204418-29214417 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313743 5265 Fabidae View MSA
124072571 5270 Rosid View MSA
123740807 5271 Pentapetalae View MSA
122787456 5272 Eudicot View MSA
122046891 5273 Angiosperm View MSA
121348097 5274 Embryophyte View MSA
123427504 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.02228 0.0 11.4522   High
cufflinks 2.09742 0.0 6.42316    
cufflinks 0.26457 0.0 1.00129 Low Low
cufflinks 1.21813 0.0 4.00838    
cufflinks 0.74544 0.0 2.59432    
cufflinks 3.03169 0.0 8.89023   High
cufflinks 1.03347 0.0 3.42756    
cufflinks 0.509871 0.0 1.81664   Low
cufflinks 1.34657 0.0 4.34368    
cufflinks 1.94965 0.0 6.03189    
cufflinks 1.19529 0.0 3.92422    

0 Strain