Gene : Phvul.006G198700 P. vulgaris v2.1
Defline:  (1 of 4) 1.8.4.12 - Peptide-methionine (R)-S-oxide reductase / Selenoprotein R Genomic Order:  2001
Name:  ? Phvul.006G198700 Secondary Identifier:  ? PAC:37172277
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G198700 0.5kb upstream 0.5kb upstream 3809 true Chr06: 29597370-29601178 Phaseolus vulgaris
Phvul.006G198700 0.5kb upstream 0.5kb upstream 500 false Chr06: 29600679-29601178 Phaseolus vulgaris
Phvul.006G198700 0.5kb downstream 0.5kb downstream 3809 true Chr06: 29596870-29600678 Phaseolus vulgaris
Phvul.006G198700 0.5kb downstream 0.5kb downstream 500 false Chr06: 29596870-29597369 Phaseolus vulgaris
Phvul.006G198700 1.0kb upstream 1.0kb upstream 4309 true Chr06: 29597370-29601678 Phaseolus vulgaris
Phvul.006G198700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 29600679-29601678 Phaseolus vulgaris
Phvul.006G198700 1.0kb downstream 1.0kb downstream 4309 true Chr06: 29596370-29600678 Phaseolus vulgaris
Phvul.006G198700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 29596370-29597369 Phaseolus vulgaris
Phvul.006G198700 2.0kb upstream 2.0kb upstream 5309 true Chr06: 29597370-29602678 Phaseolus vulgaris
Phvul.006G198700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 29600679-29602678 Phaseolus vulgaris
Phvul.006G198700 2.0kb downstream 2.0kb downstream 5309 true Chr06: 29595370-29600678 Phaseolus vulgaris
Phvul.006G198700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 29595370-29597369 Phaseolus vulgaris
Phvul.006G198700 5.0kb upstream 5.0kb upstream 8309 true Chr06: 29597370-29605678 Phaseolus vulgaris
Phvul.006G198700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 29600679-29605678 Phaseolus vulgaris
Phvul.006G198700 5.0kb downstream 5.0kb downstream 8309 true Chr06: 29592370-29600678 Phaseolus vulgaris
Phvul.006G198700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 29592370-29597369 Phaseolus vulgaris
Phvul.006G198700 10.0kb upstream 10.0kb upstream 13309 true Chr06: 29597370-29610678 Phaseolus vulgaris
Phvul.006G198700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 29600679-29610678 Phaseolus vulgaris
Phvul.006G198700 10.0kb downstream 10.0kb downstream 13309 true Chr06: 29587370-29600678 Phaseolus vulgaris
Phvul.006G198700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 29587370-29597369 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306883 5265 Fabidae View MSA
124064103 5270 Rosid View MSA
123748657 5271 Pentapetalae View MSA
122793601 5272 Eudicot View MSA
122047974 5273 Angiosperm View MSA
121348855 5274 Embryophyte View MSA
123426618 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.9066 0.0 87.8107 High  
cufflinks 43.1482 0.0 111.53 High  
cufflinks 94.3572 0.0 251.698 High High
cufflinks 48.7262 0.0 126.027 High  
cufflinks 46.2284 0.0 119.519 High  
cufflinks 55.0096 0.0 142.632 High  
cufflinks 13.4968 0.0 36.9665   Low
cufflinks 31.2453 0.0 81.0519 High  
cufflinks 13.8731 0.0 37.9918   Low
cufflinks 56.54 0.0 146.628 High  
cufflinks 39.4411 0.0 102.009 High  

0 Strain