Gene : Phvul.009G082400 P. vulgaris v2.1
Defline:  (1 of 2) K01533 - Cu2+-exporting ATPase (copB) Genomic Order:  847
Name:  ? Phvul.009G082400 Secondary Identifier:  ? PAC:37150380
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G082400 0.5kb upstream 0.5kb upstream 10336 true Chr09: 13563055-13573390 Phaseolus vulgaris
Phvul.009G082400 0.5kb upstream 0.5kb upstream 500 false Chr09: 13563055-13563554 Phaseolus vulgaris
Phvul.009G082400 0.5kb downstream 0.5kb downstream 10336 true Chr09: 13563555-13573890 Phaseolus vulgaris
Phvul.009G082400 0.5kb downstream 0.5kb downstream 500 false Chr09: 13573391-13573890 Phaseolus vulgaris
Phvul.009G082400 1.0kb upstream 1.0kb upstream 10836 true Chr09: 13562555-13573390 Phaseolus vulgaris
Phvul.009G082400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 13562555-13563554 Phaseolus vulgaris
Phvul.009G082400 1.0kb downstream 1.0kb downstream 10836 true Chr09: 13563555-13574390 Phaseolus vulgaris
Phvul.009G082400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 13573391-13574390 Phaseolus vulgaris
Phvul.009G082400 2.0kb upstream 2.0kb upstream 11836 true Chr09: 13561555-13573390 Phaseolus vulgaris
Phvul.009G082400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 13561555-13563554 Phaseolus vulgaris
Phvul.009G082400 2.0kb downstream 2.0kb downstream 11836 true Chr09: 13563555-13575390 Phaseolus vulgaris
Phvul.009G082400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 13573391-13575390 Phaseolus vulgaris
Phvul.009G082400 5.0kb upstream 5.0kb upstream 14836 true Chr09: 13558555-13573390 Phaseolus vulgaris
Phvul.009G082400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 13558555-13563554 Phaseolus vulgaris
Phvul.009G082400 5.0kb downstream 5.0kb downstream 14836 true Chr09: 13563555-13578390 Phaseolus vulgaris
Phvul.009G082400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 13573391-13578390 Phaseolus vulgaris
Phvul.009G082400 10.0kb upstream 10.0kb upstream 19836 true Chr09: 13553555-13573390 Phaseolus vulgaris
Phvul.009G082400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 13553555-13563554 Phaseolus vulgaris
Phvul.009G082400 10.0kb downstream 10.0kb downstream 19836 true Chr09: 13563555-13583390 Phaseolus vulgaris
Phvul.009G082400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 13573391-13583390 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308435 5265 Fabidae View MSA
124065227 5270 Rosid View MSA
123737112 5271 Pentapetalae View MSA
122796910 5272 Eudicot View MSA
122047959 5273 Angiosperm View MSA
121350289 5274 Embryophyte View MSA
123427971 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.52695 0.0 9.86133    
cufflinks 5.50977 0.0 14.8313    
cufflinks 15.7753 0.0 40.7959   High
cufflinks 2.0567 0.0 6.11171   Low
cufflinks 4.773 0.0 13.017    
cufflinks 15.1148 0.0 39.0751   High
cufflinks 2.94794 0.0 8.37409    
cufflinks 4.71458 0.0 12.8408    
cufflinks 2.70711 0.0 7.77831    
cufflinks 8.68367 0.0 22.6854    
cufflinks 3.97577 0.0 11.0094    

0 Strain