Gene : Phvul.006G183100 P. vulgaris v2.1
Defline:  (1 of 180) PF00847 - AP2 domain (AP2) Genomic Order:  1844
Name:  ? Phvul.006G183100 Secondary Identifier:  ? PAC:37172620
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G183100 0.5kb upstream 0.5kb upstream 2239 true Chr06: 28430673-28432911 Phaseolus vulgaris
Phvul.006G183100 0.5kb upstream 0.5kb upstream 500 false Chr06: 28430673-28431172 Phaseolus vulgaris
Phvul.006G183100 0.5kb downstream 0.5kb downstream 2239 true Chr06: 28431173-28433411 Phaseolus vulgaris
Phvul.006G183100 0.5kb downstream 0.5kb downstream 500 false Chr06: 28432912-28433411 Phaseolus vulgaris
Phvul.006G183100 1.0kb upstream 1.0kb upstream 2739 true Chr06: 28430173-28432911 Phaseolus vulgaris
Phvul.006G183100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28430173-28431172 Phaseolus vulgaris
Phvul.006G183100 1.0kb downstream 1.0kb downstream 2739 true Chr06: 28431173-28433911 Phaseolus vulgaris
Phvul.006G183100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28432912-28433911 Phaseolus vulgaris
Phvul.006G183100 2.0kb upstream 2.0kb upstream 3739 true Chr06: 28429173-28432911 Phaseolus vulgaris
Phvul.006G183100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28429173-28431172 Phaseolus vulgaris
Phvul.006G183100 2.0kb downstream 2.0kb downstream 3739 true Chr06: 28431173-28434911 Phaseolus vulgaris
Phvul.006G183100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28432912-28434911 Phaseolus vulgaris
Phvul.006G183100 5.0kb upstream 5.0kb upstream 6739 true Chr06: 28426173-28432911 Phaseolus vulgaris
Phvul.006G183100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28426173-28431172 Phaseolus vulgaris
Phvul.006G183100 5.0kb downstream 5.0kb downstream 6739 true Chr06: 28431173-28437911 Phaseolus vulgaris
Phvul.006G183100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28432912-28437911 Phaseolus vulgaris
Phvul.006G183100 10.0kb upstream 10.0kb upstream 11739 true Chr06: 28421173-28432911 Phaseolus vulgaris
Phvul.006G183100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28421173-28431172 Phaseolus vulgaris
Phvul.006G183100 10.0kb downstream 10.0kb downstream 11739 true Chr06: 28431173-28442911 Phaseolus vulgaris
Phvul.006G183100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28432912-28442911 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312112 5265 Fabidae View MSA
124071408 5270 Rosid View MSA
123744061 5271 Pentapetalae View MSA
122791719 5272 Eudicot View MSA
122049614 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.2792 0.0 52.727    
cufflinks 8.57892 0.0 23.7215    
cufflinks 0.945147 0.0 3.33728   Low
cufflinks 17.7818 0.0 46.3748    
cufflinks 7.13361 0.0 19.9269    
cufflinks 1.8927 0.0 6.16395   Low
cufflinks 45.3298 0.0 118.498 High High
cufflinks 25.2302 0.0 65.2701    
cufflinks 9.89478 0.0 26.9011    
cufflinks 101.008 0.0 279.768 High High
cufflinks 5.41671 0.0 15.5637    

0 Strain