Gene : Phvul.009G080900 P. vulgaris v2.1
Defline:  (1 of 3) K14795 - ribosomal RNA-processing protein 36 (RRP36) Genomic Order:  830
Name:  ? Phvul.009G080900 Secondary Identifier:  ? PAC:37150124
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G080900 0.5kb upstream 0.5kb upstream 3784 true Chr09: 13377525-13381308 Phaseolus vulgaris
Phvul.009G080900 0.5kb upstream 0.5kb upstream 500 false Chr09: 13380809-13381308 Phaseolus vulgaris
Phvul.009G080900 0.5kb downstream 0.5kb downstream 3784 true Chr09: 13377025-13380808 Phaseolus vulgaris
Phvul.009G080900 0.5kb downstream 0.5kb downstream 500 false Chr09: 13377025-13377524 Phaseolus vulgaris
Phvul.009G080900 1.0kb upstream 1.0kb upstream 4284 true Chr09: 13377525-13381808 Phaseolus vulgaris
Phvul.009G080900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 13380809-13381808 Phaseolus vulgaris
Phvul.009G080900 1.0kb downstream 1.0kb downstream 4284 true Chr09: 13376525-13380808 Phaseolus vulgaris
Phvul.009G080900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 13376525-13377524 Phaseolus vulgaris
Phvul.009G080900 2.0kb upstream 2.0kb upstream 5284 true Chr09: 13377525-13382808 Phaseolus vulgaris
Phvul.009G080900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 13380809-13382808 Phaseolus vulgaris
Phvul.009G080900 2.0kb downstream 2.0kb downstream 5284 true Chr09: 13375525-13380808 Phaseolus vulgaris
Phvul.009G080900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 13375525-13377524 Phaseolus vulgaris
Phvul.009G080900 5.0kb upstream 5.0kb upstream 8284 true Chr09: 13377525-13385808 Phaseolus vulgaris
Phvul.009G080900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 13380809-13385808 Phaseolus vulgaris
Phvul.009G080900 5.0kb downstream 5.0kb downstream 8284 true Chr09: 13372525-13380808 Phaseolus vulgaris
Phvul.009G080900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 13372525-13377524 Phaseolus vulgaris
Phvul.009G080900 10.0kb upstream 10.0kb upstream 13284 true Chr09: 13377525-13390808 Phaseolus vulgaris
Phvul.009G080900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 13380809-13390808 Phaseolus vulgaris
Phvul.009G080900 10.0kb downstream 10.0kb downstream 13284 true Chr09: 13367525-13380808 Phaseolus vulgaris
Phvul.009G080900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 13367525-13377524 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306415 5265 Fabidae View MSA
124065033 5270 Rosid View MSA
123748708 5271 Pentapetalae View MSA
122790262 5272 Eudicot View MSA
122043218 5273 Angiosperm View MSA
121347730 5274 Embryophyte View MSA
123428667 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.63732 0.0 18.4269    
cufflinks 4.2119 0.0 19.9569    
cufflinks 4.353 0.0 17.8163    
cufflinks 2.02795 0.0 12.1556   Low
cufflinks 2.66853 0.0 12.3585    
cufflinks 2.7401 0.0 12.2062    
cufflinks 3.75073 0.0 17.944    
cufflinks 5.40232 0.0 23.4136   High
cufflinks 3.62341 0.0 17.5238    
cufflinks 3.70817 0.0 19.609    
cufflinks 3.14089 0.0 16.3587    

0 Strain