Gene : Phvul.006G187100 P. vulgaris v2.1
Defline:  (1 of 1) K04712 - sphingolipid delta-4 desaturase (DEGS) Genomic Order:  1885
Name:  ? Phvul.006G187100 Secondary Identifier:  ? PAC:37174171
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G187100 0.5kb upstream 0.5kb upstream 2542 true Chr06: 28768212-28770753 Phaseolus vulgaris
Phvul.006G187100 0.5kb upstream 0.5kb upstream 500 false Chr06: 28770254-28770753 Phaseolus vulgaris
Phvul.006G187100 0.5kb downstream 0.5kb downstream 2542 true Chr06: 28767712-28770253 Phaseolus vulgaris
Phvul.006G187100 0.5kb downstream 0.5kb downstream 500 false Chr06: 28767712-28768211 Phaseolus vulgaris
Phvul.006G187100 1.0kb upstream 1.0kb upstream 3042 true Chr06: 28768212-28771253 Phaseolus vulgaris
Phvul.006G187100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28770254-28771253 Phaseolus vulgaris
Phvul.006G187100 1.0kb downstream 1.0kb downstream 3042 true Chr06: 28767212-28770253 Phaseolus vulgaris
Phvul.006G187100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28767212-28768211 Phaseolus vulgaris
Phvul.006G187100 2.0kb upstream 2.0kb upstream 4042 true Chr06: 28768212-28772253 Phaseolus vulgaris
Phvul.006G187100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28770254-28772253 Phaseolus vulgaris
Phvul.006G187100 2.0kb downstream 2.0kb downstream 4042 true Chr06: 28766212-28770253 Phaseolus vulgaris
Phvul.006G187100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28766212-28768211 Phaseolus vulgaris
Phvul.006G187100 5.0kb upstream 5.0kb upstream 7042 true Chr06: 28768212-28775253 Phaseolus vulgaris
Phvul.006G187100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28770254-28775253 Phaseolus vulgaris
Phvul.006G187100 5.0kb downstream 5.0kb downstream 7042 true Chr06: 28763212-28770253 Phaseolus vulgaris
Phvul.006G187100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28763212-28768211 Phaseolus vulgaris
Phvul.006G187100 10.0kb upstream 10.0kb upstream 12042 true Chr06: 28768212-28780253 Phaseolus vulgaris
Phvul.006G187100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28770254-28780253 Phaseolus vulgaris
Phvul.006G187100 10.0kb downstream 10.0kb downstream 12042 true Chr06: 28758212-28770253 Phaseolus vulgaris
Phvul.006G187100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28758212-28768211 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305345 5265 Fabidae View MSA
124069384 5270 Rosid View MSA
123741944 5271 Pentapetalae View MSA
122796748 5272 Eudicot View MSA
122048709 5273 Angiosperm View MSA
121348431 5274 Embryophyte View MSA
123425717 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.2096 0.0 143.086 High High
cufflinks 12.1783 0.0 33.7613    
cufflinks 7.72067 0.0 22.2984    
cufflinks 66.132 0.0 172.071 High High
cufflinks 5.84879 0.0 17.4958    
cufflinks 6.26369 0.0 18.5774    
cufflinks 11.812 0.0 32.8943    
cufflinks 57.0255 0.0 147.917 High High
cufflinks 7.22983 0.0 21.2252    
cufflinks 1.6017 0.0 5.54414   Low
cufflinks 7.74214 0.0 22.4938    

0 Strain