Gene : Phvul.006G186100 P. vulgaris v2.1
Defline:  (1 of 1) K14864 - tRNA (cytidine32/guanosine34-2'-O)-methyltransferase [EC:2.1.1.205] (FTSJ1, TRM7) Genomic Order:  1874
Name:  ? Phvul.006G186100 Secondary Identifier:  ? PAC:37173678
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6829 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G186100 0.5kb upstream 0.5kb upstream 7114 true Chr06: 28707286-28714399 Phaseolus vulgaris
Phvul.006G186100 0.5kb upstream 0.5kb upstream 500 false Chr06: 28707286-28707785 Phaseolus vulgaris
Phvul.006G186100 0.5kb downstream 0.5kb downstream 7114 true Chr06: 28707786-28714899 Phaseolus vulgaris
Phvul.006G186100 0.5kb downstream 0.5kb downstream 500 false Chr06: 28714400-28714899 Phaseolus vulgaris
Phvul.006G186100 1.0kb upstream 1.0kb upstream 7614 true Chr06: 28706786-28714399 Phaseolus vulgaris
Phvul.006G186100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28706786-28707785 Phaseolus vulgaris
Phvul.006G186100 1.0kb downstream 1.0kb downstream 7614 true Chr06: 28707786-28715399 Phaseolus vulgaris
Phvul.006G186100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28714400-28715399 Phaseolus vulgaris
Phvul.006G186100 2.0kb upstream 2.0kb upstream 8614 true Chr06: 28705786-28714399 Phaseolus vulgaris
Phvul.006G186100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28705786-28707785 Phaseolus vulgaris
Phvul.006G186100 2.0kb downstream 2.0kb downstream 8614 true Chr06: 28707786-28716399 Phaseolus vulgaris
Phvul.006G186100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28714400-28716399 Phaseolus vulgaris
Phvul.006G186100 5.0kb upstream 5.0kb upstream 11614 true Chr06: 28702786-28714399 Phaseolus vulgaris
Phvul.006G186100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28702786-28707785 Phaseolus vulgaris
Phvul.006G186100 5.0kb downstream 5.0kb downstream 11614 true Chr06: 28707786-28719399 Phaseolus vulgaris
Phvul.006G186100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28714400-28719399 Phaseolus vulgaris
Phvul.006G186100 10.0kb upstream 10.0kb upstream 16614 true Chr06: 28697786-28714399 Phaseolus vulgaris
Phvul.006G186100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28697786-28707785 Phaseolus vulgaris
Phvul.006G186100 10.0kb downstream 10.0kb downstream 16614 true Chr06: 28707786-28724399 Phaseolus vulgaris
Phvul.006G186100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28714400-28724399 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312091 5265 Fabidae View MSA
124067188 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.03558 0.0 14.2472   Low
cufflinks 5.95943 0.0 16.6382    
cufflinks 4.58871 0.0 13.1074   Low
cufflinks 5.14078 0.0 14.616    
cufflinks 5.93328 0.0 16.6021    
cufflinks 5.24052 0.0 14.8006    
cufflinks 6.23235 0.0 17.3045    
cufflinks 6.41421 0.0 17.722    
cufflinks 6.7449 0.0 18.6314   High
cufflinks 6.32874 0.0 17.5774    
cufflinks 6.36303 0.0 17.6821    

0 Strain