Gene : Phvul.006G186300 P. vulgaris v2.1
Defline:  (1 of 4) PF05755 - Rubber elongation factor protein (REF) (REF) Genomic Order:  1876
Name:  ? Phvul.006G186300 Secondary Identifier:  ? PAC:37172540
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G186300 0.5kb upstream 0.5kb upstream 1994 true Chr06: 28720765-28722758 Phaseolus vulgaris
Phvul.006G186300 0.5kb upstream 0.5kb upstream 500 false Chr06: 28722259-28722758 Phaseolus vulgaris
Phvul.006G186300 0.5kb downstream 0.5kb downstream 1994 true Chr06: 28720265-28722258 Phaseolus vulgaris
Phvul.006G186300 0.5kb downstream 0.5kb downstream 500 false Chr06: 28720265-28720764 Phaseolus vulgaris
Phvul.006G186300 1.0kb upstream 1.0kb upstream 2494 true Chr06: 28720765-28723258 Phaseolus vulgaris
Phvul.006G186300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28722259-28723258 Phaseolus vulgaris
Phvul.006G186300 1.0kb downstream 1.0kb downstream 2494 true Chr06: 28719765-28722258 Phaseolus vulgaris
Phvul.006G186300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28719765-28720764 Phaseolus vulgaris
Phvul.006G186300 2.0kb upstream 2.0kb upstream 3494 true Chr06: 28720765-28724258 Phaseolus vulgaris
Phvul.006G186300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28722259-28724258 Phaseolus vulgaris
Phvul.006G186300 2.0kb downstream 2.0kb downstream 3494 true Chr06: 28718765-28722258 Phaseolus vulgaris
Phvul.006G186300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28718765-28720764 Phaseolus vulgaris
Phvul.006G186300 5.0kb upstream 5.0kb upstream 6494 true Chr06: 28720765-28727258 Phaseolus vulgaris
Phvul.006G186300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28722259-28727258 Phaseolus vulgaris
Phvul.006G186300 5.0kb downstream 5.0kb downstream 6494 true Chr06: 28715765-28722258 Phaseolus vulgaris
Phvul.006G186300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28715765-28720764 Phaseolus vulgaris
Phvul.006G186300 10.0kb upstream 10.0kb upstream 11494 true Chr06: 28720765-28732258 Phaseolus vulgaris
Phvul.006G186300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28722259-28732258 Phaseolus vulgaris
Phvul.006G186300 10.0kb downstream 10.0kb downstream 11494 true Chr06: 28710765-28722258 Phaseolus vulgaris
Phvul.006G186300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28710765-28720764 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314163 5265 Fabidae View MSA
124071747 5270 Rosid View MSA
123747287 5271 Pentapetalae View MSA
122790209 5272 Eudicot View MSA
122043264 5273 Angiosperm View MSA
121343982 5274 Embryophyte View MSA
123379951 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 222.947 0.0 637.688 High High
cufflinks 58.7627 0.0 152.055 High  
cufflinks 45.111 0.0 116.707 High  
cufflinks 114.064 0.0 307.236 High  
cufflinks 72.5479 0.0 189.219 High  
cufflinks 36.3322 0.0 94.3575 High Low
cufflinks 83.6651 0.0 219.827 High  
cufflinks 62.6843 0.0 162.436 High  
cufflinks 55.9168 0.0 144.732 High  
cufflinks 245.881 0.0 711.575 High High
cufflinks 86.6197 0.0 227.881 High  

0 Strain