Gene : Phvul.006G188000 P. vulgaris v2.1
Defline:  (1 of 3) K01988 - lactosylceramide 4-alpha-galactosyltransferase (A4GALT) Genomic Order:  1894
Name:  ? Phvul.006G188000 Secondary Identifier:  ? PAC:37173487
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G188000 0.5kb upstream 0.5kb upstream 1790 true Chr06: 28844372-28846161 Phaseolus vulgaris
Phvul.006G188000 0.5kb upstream 0.5kb upstream 500 false Chr06: 28844372-28844871 Phaseolus vulgaris
Phvul.006G188000 0.5kb downstream 0.5kb downstream 1790 true Chr06: 28844872-28846661 Phaseolus vulgaris
Phvul.006G188000 0.5kb downstream 0.5kb downstream 500 false Chr06: 28846162-28846661 Phaseolus vulgaris
Phvul.006G188000 1.0kb upstream 1.0kb upstream 2290 true Chr06: 28843872-28846161 Phaseolus vulgaris
Phvul.006G188000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28843872-28844871 Phaseolus vulgaris
Phvul.006G188000 1.0kb downstream 1.0kb downstream 2290 true Chr06: 28844872-28847161 Phaseolus vulgaris
Phvul.006G188000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28846162-28847161 Phaseolus vulgaris
Phvul.006G188000 2.0kb upstream 2.0kb upstream 3290 true Chr06: 28842872-28846161 Phaseolus vulgaris
Phvul.006G188000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28842872-28844871 Phaseolus vulgaris
Phvul.006G188000 2.0kb downstream 2.0kb downstream 3290 true Chr06: 28844872-28848161 Phaseolus vulgaris
Phvul.006G188000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28846162-28848161 Phaseolus vulgaris
Phvul.006G188000 5.0kb upstream 5.0kb upstream 6290 true Chr06: 28839872-28846161 Phaseolus vulgaris
Phvul.006G188000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28839872-28844871 Phaseolus vulgaris
Phvul.006G188000 5.0kb downstream 5.0kb downstream 6290 true Chr06: 28844872-28851161 Phaseolus vulgaris
Phvul.006G188000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28846162-28851161 Phaseolus vulgaris
Phvul.006G188000 10.0kb upstream 10.0kb upstream 11290 true Chr06: 28834872-28846161 Phaseolus vulgaris
Phvul.006G188000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28834872-28844871 Phaseolus vulgaris
Phvul.006G188000 10.0kb downstream 10.0kb downstream 11290 true Chr06: 28844872-28856161 Phaseolus vulgaris
Phvul.006G188000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28846162-28856161 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307240 5265 Fabidae View MSA
124061006 5270 Rosid View MSA
123741255 5271 Pentapetalae View MSA
122792990 5272 Eudicot View MSA
122047260 5273 Angiosperm View MSA
121347765 5274 Embryophyte View MSA
123425560 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.324661 0.0 1.28307 Low  
cufflinks 1.53353 0.0 5.30724   High
cufflinks 1.65547 0.0 5.66803   High
cufflinks 0.385184 0.0 1.50439 Low  
cufflinks 0.514616 0.0 1.97052 Low  
cufflinks 2.30982 0.0 7.63286   High
cufflinks 0.0984615 0.0 0.43073 Low Low
cufflinks 0.14835 0.0 0.625503 Low  
cufflinks 0.0369701 0.0 0.17957 Low Low
cufflinks 0.242619 0.0 0.985281 Low  
cufflinks 0.527706 0.0 2.01725 Low  

0 Strain