Gene : Phvul.006G188900 P. vulgaris v2.1
Defline:  (1 of 91) PF02365 - No apical meristem (NAM) protein (NAM) Genomic Order:  1903
Name:  ? Phvul.006G188900 Secondary Identifier:  ? PAC:37173263
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G188900 0.5kb upstream 0.5kb upstream 2277 true Chr06: 28926395-28928671 Phaseolus vulgaris
Phvul.006G188900 0.5kb upstream 0.5kb upstream 500 false Chr06: 28926395-28926894 Phaseolus vulgaris
Phvul.006G188900 0.5kb downstream 0.5kb downstream 2277 true Chr06: 28926895-28929171 Phaseolus vulgaris
Phvul.006G188900 0.5kb downstream 0.5kb downstream 500 false Chr06: 28928672-28929171 Phaseolus vulgaris
Phvul.006G188900 1.0kb upstream 1.0kb upstream 2777 true Chr06: 28925895-28928671 Phaseolus vulgaris
Phvul.006G188900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28925895-28926894 Phaseolus vulgaris
Phvul.006G188900 1.0kb downstream 1.0kb downstream 2777 true Chr06: 28926895-28929671 Phaseolus vulgaris
Phvul.006G188900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28928672-28929671 Phaseolus vulgaris
Phvul.006G188900 2.0kb upstream 2.0kb upstream 3777 true Chr06: 28924895-28928671 Phaseolus vulgaris
Phvul.006G188900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28924895-28926894 Phaseolus vulgaris
Phvul.006G188900 2.0kb downstream 2.0kb downstream 3777 true Chr06: 28926895-28930671 Phaseolus vulgaris
Phvul.006G188900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28928672-28930671 Phaseolus vulgaris
Phvul.006G188900 5.0kb upstream 5.0kb upstream 6777 true Chr06: 28921895-28928671 Phaseolus vulgaris
Phvul.006G188900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28921895-28926894 Phaseolus vulgaris
Phvul.006G188900 5.0kb downstream 5.0kb downstream 6777 true Chr06: 28926895-28933671 Phaseolus vulgaris
Phvul.006G188900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28928672-28933671 Phaseolus vulgaris
Phvul.006G188900 10.0kb upstream 10.0kb upstream 11777 true Chr06: 28916895-28928671 Phaseolus vulgaris
Phvul.006G188900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28916895-28926894 Phaseolus vulgaris
Phvul.006G188900 10.0kb downstream 10.0kb downstream 11777 true Chr06: 28926895-28938671 Phaseolus vulgaris
Phvul.006G188900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28928672-28938671 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312418 5265 Fabidae View MSA
124065723 5270 Rosid View MSA
123745074 5271 Pentapetalae View MSA
122796583 5272 Eudicot View MSA
122049237 5273 Angiosperm View MSA
121349958 5274 Embryophyte View MSA
123381516 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.35859 0.0 4.68555    
cufflinks 0.465888 0.0 1.77373 Low  
cufflinks 0.045287 0.0 0.211522 Low  
cufflinks 1.75403 0.0 5.87223   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.169184 0.0 0.695572 Low  
cufflinks 0.0420377 0.0 0.197332 Low Low
cufflinks 0.030165 0.0 0.146516 Low Low
cufflinks 1.95784 0.0 6.49702   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain