Gene : Phvul.006G188700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31008:SF6 - CSL1 Genomic Order:  1901
Name:  ? Phvul.006G188700 Secondary Identifier:  ? PAC:37172318
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G188700 0.5kb upstream 0.5kb upstream 5817 true Chr06: 28897165-28902981 Phaseolus vulgaris
Phvul.006G188700 0.5kb upstream 0.5kb upstream 500 false Chr06: 28902482-28902981 Phaseolus vulgaris
Phvul.006G188700 0.5kb downstream 0.5kb downstream 5817 true Chr06: 28896665-28902481 Phaseolus vulgaris
Phvul.006G188700 0.5kb downstream 0.5kb downstream 500 false Chr06: 28896665-28897164 Phaseolus vulgaris
Phvul.006G188700 1.0kb upstream 1.0kb upstream 6317 true Chr06: 28897165-28903481 Phaseolus vulgaris
Phvul.006G188700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28902482-28903481 Phaseolus vulgaris
Phvul.006G188700 1.0kb downstream 1.0kb downstream 6317 true Chr06: 28896165-28902481 Phaseolus vulgaris
Phvul.006G188700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28896165-28897164 Phaseolus vulgaris
Phvul.006G188700 2.0kb upstream 2.0kb upstream 7317 true Chr06: 28897165-28904481 Phaseolus vulgaris
Phvul.006G188700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28902482-28904481 Phaseolus vulgaris
Phvul.006G188700 2.0kb downstream 2.0kb downstream 7317 true Chr06: 28895165-28902481 Phaseolus vulgaris
Phvul.006G188700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28895165-28897164 Phaseolus vulgaris
Phvul.006G188700 5.0kb upstream 5.0kb upstream 10317 true Chr06: 28897165-28907481 Phaseolus vulgaris
Phvul.006G188700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28902482-28907481 Phaseolus vulgaris
Phvul.006G188700 5.0kb downstream 5.0kb downstream 10317 true Chr06: 28892165-28902481 Phaseolus vulgaris
Phvul.006G188700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28892165-28897164 Phaseolus vulgaris
Phvul.006G188700 10.0kb upstream 10.0kb upstream 15317 true Chr06: 28897165-28912481 Phaseolus vulgaris
Phvul.006G188700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28902482-28912481 Phaseolus vulgaris
Phvul.006G188700 10.0kb downstream 10.0kb downstream 15317 true Chr06: 28887165-28902481 Phaseolus vulgaris
Phvul.006G188700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28887165-28897164 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311812 5265 Fabidae View MSA
124066704 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.57009 0.0 12.4305   Low
cufflinks 6.92616 0.0 18.2831   Low
cufflinks 43.9794 0.0 121.447 High High
cufflinks 10.0754 0.0 26.1846    
cufflinks 19.9214 0.0 51.7138    
cufflinks 27.1793 0.0 71.9132    
cufflinks 20.3367 0.0 53.0393    
cufflinks 14.6514 0.0 37.9012    
cufflinks 29.9037 0.0 79.7968    
cufflinks 15.6796 0.0 40.5606    
cufflinks 17.326 0.0 44.8644    

0 Strain