Gene : Phvul.009G087200 P. vulgaris v2.1
Defline:  (1 of 4) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  897
Name:  ? Phvul.009G087200 Secondary Identifier:  ? PAC:37150806
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3461 Phaseolus vulgaris pathologic  
Pvulgaris PWY-3462 Phaseolus vulgaris pathologic  
Pvulgaris PWY-3481 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G087200 0.5kb upstream 0.5kb upstream 4293 true Chr09: 14101196-14105488 Phaseolus vulgaris
Phvul.009G087200 0.5kb upstream 0.5kb upstream 500 false Chr09: 14104989-14105488 Phaseolus vulgaris
Phvul.009G087200 0.5kb downstream 0.5kb downstream 4293 true Chr09: 14100696-14104988 Phaseolus vulgaris
Phvul.009G087200 0.5kb downstream 0.5kb downstream 500 false Chr09: 14100696-14101195 Phaseolus vulgaris
Phvul.009G087200 1.0kb upstream 1.0kb upstream 4793 true Chr09: 14101196-14105988 Phaseolus vulgaris
Phvul.009G087200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 14104989-14105988 Phaseolus vulgaris
Phvul.009G087200 1.0kb downstream 1.0kb downstream 4793 true Chr09: 14100196-14104988 Phaseolus vulgaris
Phvul.009G087200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 14100196-14101195 Phaseolus vulgaris
Phvul.009G087200 2.0kb upstream 2.0kb upstream 5793 true Chr09: 14101196-14106988 Phaseolus vulgaris
Phvul.009G087200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 14104989-14106988 Phaseolus vulgaris
Phvul.009G087200 2.0kb downstream 2.0kb downstream 5793 true Chr09: 14099196-14104988 Phaseolus vulgaris
Phvul.009G087200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 14099196-14101195 Phaseolus vulgaris
Phvul.009G087200 5.0kb upstream 5.0kb upstream 8793 true Chr09: 14101196-14109988 Phaseolus vulgaris
Phvul.009G087200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 14104989-14109988 Phaseolus vulgaris
Phvul.009G087200 5.0kb downstream 5.0kb downstream 8793 true Chr09: 14096196-14104988 Phaseolus vulgaris
Phvul.009G087200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 14096196-14101195 Phaseolus vulgaris
Phvul.009G087200 10.0kb upstream 10.0kb upstream 13793 true Chr09: 14101196-14114988 Phaseolus vulgaris
Phvul.009G087200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 14104989-14114988 Phaseolus vulgaris
Phvul.009G087200 10.0kb downstream 10.0kb downstream 13793 true Chr09: 14091196-14104988 Phaseolus vulgaris
Phvul.009G087200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 14091196-14101195 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297137 5265 Fabidae View MSA
124041578 5270 Rosid View MSA
123742772 5271 Pentapetalae View MSA
122797161 5272 Eudicot View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.22635 0.0 11.111    
cufflinks 2.12877 0.0 8.39454    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.66766 0.0 7.05033    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.443477 0.0 1.73426 Low  
cufflinks 2.73847 0.0 15.4396    
cufflinks 31.6012 0.0 101.748 High High
cufflinks 0.580021 0.0 2.72961    
cufflinks 0.0182816 0.0 0.133516 Low Low
cufflinks 0.283991 0.0 1.15184 Low  

0 Strain