Gene : Phvul.006G189300 P. vulgaris v2.1
Defline:  (1 of 1) PF08513//PF10607 - LisH (LisH) // CTLH/CRA C-terminal to LisH motif domain (CLTH) Genomic Order:  1907
Name:  ? Phvul.006G189300 Secondary Identifier:  ? PAC:37171344
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G189300 0.5kb upstream 0.5kb upstream 6099 true Chr06: 28956513-28962611 Phaseolus vulgaris
Phvul.006G189300 0.5kb upstream 0.5kb upstream 500 false Chr06: 28956513-28957012 Phaseolus vulgaris
Phvul.006G189300 0.5kb downstream 0.5kb downstream 6099 true Chr06: 28957013-28963111 Phaseolus vulgaris
Phvul.006G189300 0.5kb downstream 0.5kb downstream 500 false Chr06: 28962612-28963111 Phaseolus vulgaris
Phvul.006G189300 1.0kb upstream 1.0kb upstream 6599 true Chr06: 28956013-28962611 Phaseolus vulgaris
Phvul.006G189300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28956013-28957012 Phaseolus vulgaris
Phvul.006G189300 1.0kb downstream 1.0kb downstream 6599 true Chr06: 28957013-28963611 Phaseolus vulgaris
Phvul.006G189300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28962612-28963611 Phaseolus vulgaris
Phvul.006G189300 2.0kb upstream 2.0kb upstream 7599 true Chr06: 28955013-28962611 Phaseolus vulgaris
Phvul.006G189300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28955013-28957012 Phaseolus vulgaris
Phvul.006G189300 2.0kb downstream 2.0kb downstream 7599 true Chr06: 28957013-28964611 Phaseolus vulgaris
Phvul.006G189300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28962612-28964611 Phaseolus vulgaris
Phvul.006G189300 5.0kb upstream 5.0kb upstream 10599 true Chr06: 28952013-28962611 Phaseolus vulgaris
Phvul.006G189300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28952013-28957012 Phaseolus vulgaris
Phvul.006G189300 5.0kb downstream 5.0kb downstream 10599 true Chr06: 28957013-28967611 Phaseolus vulgaris
Phvul.006G189300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28962612-28967611 Phaseolus vulgaris
Phvul.006G189300 10.0kb upstream 10.0kb upstream 15599 true Chr06: 28947013-28962611 Phaseolus vulgaris
Phvul.006G189300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28947013-28957012 Phaseolus vulgaris
Phvul.006G189300 10.0kb downstream 10.0kb downstream 15599 true Chr06: 28957013-28972611 Phaseolus vulgaris
Phvul.006G189300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28962612-28972611 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314976 5265 Fabidae View MSA
124050830 5270 Rosid View MSA
123749928 5271 Pentapetalae View MSA
122788874 5272 Eudicot View MSA
122047349 5273 Angiosperm View MSA
121347103 5274 Embryophyte View MSA
123424554 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.8244 0.0 105.959 High High
cufflinks 31.1999 0.0 80.6457    
cufflinks 47.5045 0.0 123.858 High High
cufflinks 35.8415 0.0 92.6545 High  
cufflinks 23.3641 0.0 60.737   Low
cufflinks 30.6696 0.0 79.2757    
cufflinks 32.1449 0.0 83.095 High  
cufflinks 30.3034 0.0 78.3315 High  
cufflinks 30.9104 0.0 79.8984 High  
cufflinks 17.3289 0.0 45.5129   Low
cufflinks 32.0313 0.0 82.7954    

0 Strain