Gene : Phvul.006G182300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11468:SF3 - GLYCOGEN PHOSPHORYLASE Genomic Order:  1836
Name:  ? Phvul.006G182300 Secondary Identifier:  ? PAC:37173456
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7238 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G182300 0.5kb upstream 0.5kb upstream 17081 true Chr06: 28376728-28393808 Phaseolus vulgaris
Phvul.006G182300 0.5kb upstream 0.5kb upstream 500 false Chr06: 28376728-28377227 Phaseolus vulgaris
Phvul.006G182300 0.5kb downstream 0.5kb downstream 17081 true Chr06: 28377228-28394308 Phaseolus vulgaris
Phvul.006G182300 0.5kb downstream 0.5kb downstream 500 false Chr06: 28393809-28394308 Phaseolus vulgaris
Phvul.006G182300 1.0kb upstream 1.0kb upstream 17581 true Chr06: 28376228-28393808 Phaseolus vulgaris
Phvul.006G182300 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28376228-28377227 Phaseolus vulgaris
Phvul.006G182300 1.0kb downstream 1.0kb downstream 17581 true Chr06: 28377228-28394808 Phaseolus vulgaris
Phvul.006G182300 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28393809-28394808 Phaseolus vulgaris
Phvul.006G182300 2.0kb upstream 2.0kb upstream 18581 true Chr06: 28375228-28393808 Phaseolus vulgaris
Phvul.006G182300 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28375228-28377227 Phaseolus vulgaris
Phvul.006G182300 2.0kb downstream 2.0kb downstream 18581 true Chr06: 28377228-28395808 Phaseolus vulgaris
Phvul.006G182300 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28393809-28395808 Phaseolus vulgaris
Phvul.006G182300 5.0kb upstream 5.0kb upstream 21581 true Chr06: 28372228-28393808 Phaseolus vulgaris
Phvul.006G182300 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28372228-28377227 Phaseolus vulgaris
Phvul.006G182300 5.0kb downstream 5.0kb downstream 21581 true Chr06: 28377228-28398808 Phaseolus vulgaris
Phvul.006G182300 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28393809-28398808 Phaseolus vulgaris
Phvul.006G182300 10.0kb upstream 10.0kb upstream 26581 true Chr06: 28367228-28393808 Phaseolus vulgaris
Phvul.006G182300 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28367228-28377227 Phaseolus vulgaris
Phvul.006G182300 10.0kb downstream 10.0kb downstream 26581 true Chr06: 28377228-28403808 Phaseolus vulgaris
Phvul.006G182300 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28393809-28403808 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302564 5265 Fabidae View MSA
124070356 5270 Rosid View MSA
123742386 5271 Pentapetalae View MSA
122770279 5272 Eudicot View MSA
122048524 5273 Angiosperm View MSA
121348195 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.39116 0.0 24.3446    
cufflinks 10.8741 0.0 28.1316    
cufflinks 25.4634 0.0 67.3569   High
cufflinks 3.28689 0.0 9.19053   Low
cufflinks 8.60344 0.0 22.4139    
cufflinks 14.1757 0.0 36.6661    
cufflinks 5.3574 0.0 14.2913    
cufflinks 7.01104 0.0 18.371    
cufflinks 5.52435 0.0 14.7269    
cufflinks 14.7558 0.0 38.1896    
cufflinks 6.47547 0.0 17.1039    

0 Strain