Gene : Phvul.006G181700 P. vulgaris v2.1
Defline:  (1 of 2) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  1830
Name:  ? Phvul.006G181700 Secondary Identifier:  ? PAC:37173447
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6829 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G181700 0.5kb upstream 0.5kb upstream 2924 true Chr06: 28326634-28329557 Phaseolus vulgaris
Phvul.006G181700 0.5kb upstream 0.5kb upstream 500 false Chr06: 28326634-28327133 Phaseolus vulgaris
Phvul.006G181700 0.5kb downstream 0.5kb downstream 2924 true Chr06: 28327134-28330057 Phaseolus vulgaris
Phvul.006G181700 0.5kb downstream 0.5kb downstream 500 false Chr06: 28329558-28330057 Phaseolus vulgaris
Phvul.006G181700 1.0kb upstream 1.0kb upstream 3424 true Chr06: 28326134-28329557 Phaseolus vulgaris
Phvul.006G181700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 28326134-28327133 Phaseolus vulgaris
Phvul.006G181700 1.0kb downstream 1.0kb downstream 3424 true Chr06: 28327134-28330557 Phaseolus vulgaris
Phvul.006G181700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 28329558-28330557 Phaseolus vulgaris
Phvul.006G181700 2.0kb upstream 2.0kb upstream 4424 true Chr06: 28325134-28329557 Phaseolus vulgaris
Phvul.006G181700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 28325134-28327133 Phaseolus vulgaris
Phvul.006G181700 2.0kb downstream 2.0kb downstream 4424 true Chr06: 28327134-28331557 Phaseolus vulgaris
Phvul.006G181700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 28329558-28331557 Phaseolus vulgaris
Phvul.006G181700 5.0kb upstream 5.0kb upstream 7424 true Chr06: 28322134-28329557 Phaseolus vulgaris
Phvul.006G181700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 28322134-28327133 Phaseolus vulgaris
Phvul.006G181700 5.0kb downstream 5.0kb downstream 7424 true Chr06: 28327134-28334557 Phaseolus vulgaris
Phvul.006G181700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 28329558-28334557 Phaseolus vulgaris
Phvul.006G181700 10.0kb upstream 10.0kb upstream 12424 true Chr06: 28317134-28329557 Phaseolus vulgaris
Phvul.006G181700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 28317134-28327133 Phaseolus vulgaris
Phvul.006G181700 10.0kb downstream 10.0kb downstream 12424 true Chr06: 28327134-28339557 Phaseolus vulgaris
Phvul.006G181700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 28329558-28339557 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307322 5265 Fabidae View MSA
124067339 5270 Rosid View MSA
123740177 5271 Pentapetalae View MSA
122793445 5272 Eudicot View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.07382 0.0 15.0786    
cufflinks 4.22916 0.0 12.8419    
cufflinks 4.33139 0.0 13.0701    
cufflinks 6.53219 0.0 19.0168   High
cufflinks 4.00184 0.0 12.3193    
cufflinks 2.93594 0.0 9.28551   Low
cufflinks 5.37932 0.0 15.9083    
cufflinks 6.03344 0.0 17.5293   High
cufflinks 5.51192 0.0 16.2879    
cufflinks 3.09196 0.0 9.74286   Low
cufflinks 3.73641 0.0 11.5705    

0 Strain