Gene : Phvul.009G078400 P. vulgaris v2.1
Defline:  (1 of 2) 5.3.99.5 - Thromboxane-A synthase / Thromboxane synthetase Genomic Order:  805
Name:  ? Phvul.009G078400 Secondary Identifier:  ? PAC:37151495
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G078400 0.5kb upstream 0.5kb upstream 7045 true Chr09: 13156772-13163816 Phaseolus vulgaris
Phvul.009G078400 0.5kb upstream 0.5kb upstream 500 false Chr09: 13156772-13157271 Phaseolus vulgaris
Phvul.009G078400 0.5kb downstream 0.5kb downstream 7045 true Chr09: 13157272-13164316 Phaseolus vulgaris
Phvul.009G078400 0.5kb downstream 0.5kb downstream 500 false Chr09: 13163817-13164316 Phaseolus vulgaris
Phvul.009G078400 1.0kb upstream 1.0kb upstream 7545 true Chr09: 13156272-13163816 Phaseolus vulgaris
Phvul.009G078400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 13156272-13157271 Phaseolus vulgaris
Phvul.009G078400 1.0kb downstream 1.0kb downstream 7545 true Chr09: 13157272-13164816 Phaseolus vulgaris
Phvul.009G078400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 13163817-13164816 Phaseolus vulgaris
Phvul.009G078400 2.0kb upstream 2.0kb upstream 8545 true Chr09: 13155272-13163816 Phaseolus vulgaris
Phvul.009G078400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 13155272-13157271 Phaseolus vulgaris
Phvul.009G078400 2.0kb downstream 2.0kb downstream 8545 true Chr09: 13157272-13165816 Phaseolus vulgaris
Phvul.009G078400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 13163817-13165816 Phaseolus vulgaris
Phvul.009G078400 5.0kb upstream 5.0kb upstream 11545 true Chr09: 13152272-13163816 Phaseolus vulgaris
Phvul.009G078400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 13152272-13157271 Phaseolus vulgaris
Phvul.009G078400 5.0kb downstream 5.0kb downstream 11545 true Chr09: 13157272-13168816 Phaseolus vulgaris
Phvul.009G078400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 13163817-13168816 Phaseolus vulgaris
Phvul.009G078400 10.0kb upstream 10.0kb upstream 16545 true Chr09: 13147272-13163816 Phaseolus vulgaris
Phvul.009G078400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 13147272-13157271 Phaseolus vulgaris
Phvul.009G078400 10.0kb downstream 10.0kb downstream 16545 true Chr09: 13157272-13173816 Phaseolus vulgaris
Phvul.009G078400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 13163817-13173816 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311228 5265 Fabidae View MSA
124063797 5270 Rosid View MSA
123749479 5271 Pentapetalae View MSA
122792972 5272 Eudicot View MSA
122047544 5273 Angiosperm View MSA
123429088 5275 Viridiplantae View MSA
121347167 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.202234 0.0 0.809674 Low  
cufflinks 0.459563 0.0 2.11425 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0486556 0.0 0.233754 Low Low
cufflinks 0.956231 0.0 4.00647    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 13.5997 0.0 49.0596   High
cufflinks 6.52876 0.0 21.3353    
cufflinks 19.9551 0.0 68.3405   High
cufflinks 0.189388 0.0 1.51205 Low  
cufflinks 0.185765 0.0 0.747333 Low  

0 Strain