Gene : Phvul.009G059600 P. vulgaris v2.1
Defline:  (1 of 1) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Genomic Order:  602
Name:  ? Phvul.009G059600 Secondary Identifier:  ? PAC:37151734
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARGSYNBSUB-PWY Phaseolus vulgaris pathologic  
Pvulgaris ARGSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris CITRULBIO-PWY Phaseolus vulgaris pathologic  
Pvulgaris CITRULLINE-DEG-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-4984 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G059600 0.5kb upstream 0.5kb upstream 3638 true Chr09: 10922444-10926081 Phaseolus vulgaris
Phvul.009G059600 0.5kb upstream 0.5kb upstream 500 false Chr09: 10925582-10926081 Phaseolus vulgaris
Phvul.009G059600 0.5kb downstream 0.5kb downstream 3638 true Chr09: 10921944-10925581 Phaseolus vulgaris
Phvul.009G059600 0.5kb downstream 0.5kb downstream 500 false Chr09: 10921944-10922443 Phaseolus vulgaris
Phvul.009G059600 1.0kb upstream 1.0kb upstream 4138 true Chr09: 10922444-10926581 Phaseolus vulgaris
Phvul.009G059600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 10925582-10926581 Phaseolus vulgaris
Phvul.009G059600 1.0kb downstream 1.0kb downstream 4138 true Chr09: 10921444-10925581 Phaseolus vulgaris
Phvul.009G059600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 10921444-10922443 Phaseolus vulgaris
Phvul.009G059600 2.0kb upstream 2.0kb upstream 5138 true Chr09: 10922444-10927581 Phaseolus vulgaris
Phvul.009G059600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 10925582-10927581 Phaseolus vulgaris
Phvul.009G059600 2.0kb downstream 2.0kb downstream 5138 true Chr09: 10920444-10925581 Phaseolus vulgaris
Phvul.009G059600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 10920444-10922443 Phaseolus vulgaris
Phvul.009G059600 5.0kb upstream 5.0kb upstream 8138 true Chr09: 10922444-10930581 Phaseolus vulgaris
Phvul.009G059600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 10925582-10930581 Phaseolus vulgaris
Phvul.009G059600 5.0kb downstream 5.0kb downstream 8138 true Chr09: 10917444-10925581 Phaseolus vulgaris
Phvul.009G059600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 10917444-10922443 Phaseolus vulgaris
Phvul.009G059600 10.0kb upstream 10.0kb upstream 13138 true Chr09: 10922444-10935581 Phaseolus vulgaris
Phvul.009G059600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 10925582-10935581 Phaseolus vulgaris
Phvul.009G059600 10.0kb downstream 10.0kb downstream 13138 true Chr09: 10912444-10925581 Phaseolus vulgaris
Phvul.009G059600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 10912444-10922443 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306877 5265 Fabidae View MSA
124068629 5270 Rosid View MSA
123736976 5271 Pentapetalae View MSA
122787582 5272 Eudicot View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.3781 0.0 78.548    
cufflinks 71.8337 0.0 191.213 High High
cufflinks 24.136 0.0 62.6341    
cufflinks 56.6316 0.0 148.031 High High
cufflinks 31.3806 0.0 81.1377    
cufflinks 34.4503 0.0 89.0598 High  
cufflinks 20.4345 0.0 53.2674   Low
cufflinks 27.2271 0.0 70.4458    
cufflinks 21.691 0.0 56.4573   Low
cufflinks 42.9486 0.0 111.35 High  
cufflinks 36.3548 0.0 94.0036 High  

0 Strain