Gene : Phvul.006G168500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22880:SF153 - TRANSCRIPTION FACTOR GTE11-RELATED Genomic Order:  1692
Name:  ? Phvul.006G168500 Secondary Identifier:  ? PAC:37173604
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G168500 0.5kb upstream 0.5kb upstream 4204 true Chr06: 27207679-27211882 Phaseolus vulgaris
Phvul.006G168500 0.5kb upstream 0.5kb upstream 500 false Chr06: 27211383-27211882 Phaseolus vulgaris
Phvul.006G168500 0.5kb downstream 0.5kb downstream 4204 true Chr06: 27207179-27211382 Phaseolus vulgaris
Phvul.006G168500 0.5kb downstream 0.5kb downstream 500 false Chr06: 27207179-27207678 Phaseolus vulgaris
Phvul.006G168500 1.0kb upstream 1.0kb upstream 4704 true Chr06: 27207679-27212382 Phaseolus vulgaris
Phvul.006G168500 1.0kb upstream 1.0kb upstream 1000 false Chr06: 27211383-27212382 Phaseolus vulgaris
Phvul.006G168500 1.0kb downstream 1.0kb downstream 4704 true Chr06: 27206679-27211382 Phaseolus vulgaris
Phvul.006G168500 1.0kb downstream 1.0kb downstream 1000 false Chr06: 27206679-27207678 Phaseolus vulgaris
Phvul.006G168500 2.0kb upstream 2.0kb upstream 5704 true Chr06: 27207679-27213382 Phaseolus vulgaris
Phvul.006G168500 2.0kb upstream 2.0kb upstream 2000 false Chr06: 27211383-27213382 Phaseolus vulgaris
Phvul.006G168500 2.0kb downstream 2.0kb downstream 5704 true Chr06: 27205679-27211382 Phaseolus vulgaris
Phvul.006G168500 2.0kb downstream 2.0kb downstream 2000 false Chr06: 27205679-27207678 Phaseolus vulgaris
Phvul.006G168500 5.0kb upstream 5.0kb upstream 8704 true Chr06: 27207679-27216382 Phaseolus vulgaris
Phvul.006G168500 5.0kb upstream 5.0kb upstream 5000 false Chr06: 27211383-27216382 Phaseolus vulgaris
Phvul.006G168500 5.0kb downstream 5.0kb downstream 8704 true Chr06: 27202679-27211382 Phaseolus vulgaris
Phvul.006G168500 5.0kb downstream 5.0kb downstream 5000 false Chr06: 27202679-27207678 Phaseolus vulgaris
Phvul.006G168500 10.0kb upstream 10.0kb upstream 13704 true Chr06: 27207679-27221382 Phaseolus vulgaris
Phvul.006G168500 10.0kb upstream 10.0kb upstream 10000 false Chr06: 27211383-27221382 Phaseolus vulgaris
Phvul.006G168500 10.0kb downstream 10.0kb downstream 13704 true Chr06: 27197679-27211382 Phaseolus vulgaris
Phvul.006G168500 10.0kb downstream 10.0kb downstream 10000 false Chr06: 27197679-27207678 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300876 5265 Fabidae View MSA
124060921 5270 Rosid View MSA
123751846 5271 Pentapetalae View MSA
122796315 5272 Eudicot View MSA
122048835 5273 Angiosperm View MSA
123429103 5275 Viridiplantae View MSA
121311132 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.89112 0.0 24.0885    
cufflinks 10.6087 0.0 34.8916    
cufflinks 7.79286 0.0 23.1904    
cufflinks 5.52659 0.0 20.4559   Low
cufflinks 6.69865 0.0 24.0011    
cufflinks 5.76521 0.0 20.7431    
cufflinks 12.2302 0.0 39.3641    
cufflinks 13.7408 0.0 43.9082    
cufflinks 9.01849 0.0 30.0785    
cufflinks 23.3548 0.0 74.6813   High
cufflinks 6.65215 0.0 23.6156    

0 Strain