Gene : Phvul.009G059800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22572:SF110 - GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 2, CHLOROPLASTIC Genomic Order:  604
Name:  ? Phvul.009G059800 Secondary Identifier:  ? PAC:37149057
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYCOGENSYNTH-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-622 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G059800 0.5kb upstream 0.5kb upstream 5159 true Chr09: 10945888-10951046 Phaseolus vulgaris
Phvul.009G059800 0.5kb upstream 0.5kb upstream 500 false Chr09: 10950547-10951046 Phaseolus vulgaris
Phvul.009G059800 0.5kb downstream 0.5kb downstream 5159 true Chr09: 10945388-10950546 Phaseolus vulgaris
Phvul.009G059800 0.5kb downstream 0.5kb downstream 500 false Chr09: 10945388-10945887 Phaseolus vulgaris
Phvul.009G059800 1.0kb upstream 1.0kb upstream 5659 true Chr09: 10945888-10951546 Phaseolus vulgaris
Phvul.009G059800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 10950547-10951546 Phaseolus vulgaris
Phvul.009G059800 1.0kb downstream 1.0kb downstream 5659 true Chr09: 10944888-10950546 Phaseolus vulgaris
Phvul.009G059800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 10944888-10945887 Phaseolus vulgaris
Phvul.009G059800 2.0kb upstream 2.0kb upstream 6659 true Chr09: 10945888-10952546 Phaseolus vulgaris
Phvul.009G059800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 10950547-10952546 Phaseolus vulgaris
Phvul.009G059800 2.0kb downstream 2.0kb downstream 6659 true Chr09: 10943888-10950546 Phaseolus vulgaris
Phvul.009G059800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 10943888-10945887 Phaseolus vulgaris
Phvul.009G059800 5.0kb upstream 5.0kb upstream 9659 true Chr09: 10945888-10955546 Phaseolus vulgaris
Phvul.009G059800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 10950547-10955546 Phaseolus vulgaris
Phvul.009G059800 5.0kb downstream 5.0kb downstream 9659 true Chr09: 10940888-10950546 Phaseolus vulgaris
Phvul.009G059800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 10940888-10945887 Phaseolus vulgaris
Phvul.009G059800 10.0kb upstream 10.0kb upstream 14659 true Chr09: 10945888-10960546 Phaseolus vulgaris
Phvul.009G059800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 10950547-10960546 Phaseolus vulgaris
Phvul.009G059800 10.0kb downstream 10.0kb downstream 14659 true Chr09: 10935888-10950546 Phaseolus vulgaris
Phvul.009G059800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 10935888-10945887 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302213 5265 Fabidae View MSA
124063067 5270 Rosid View MSA
123736648 5271 Pentapetalae View MSA
122795851 5272 Eudicot View MSA
122049948 5273 Angiosperm View MSA
121348030 5274 Embryophyte View MSA
123424085 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.3977 0.0 64.7881   Low
cufflinks 39.7062 0.0 297.789 High  
cufflinks 38.8039 0.0 202.791 High  
cufflinks 38.738 0.0 293.532 High  
cufflinks 27.8954 0.0 145.865    
cufflinks 31.957 0.0 187.142    
cufflinks 24.2095 0.0 112.552    
cufflinks 100.084 0.0 380.486 High High
cufflinks 10.0317 0.0 45.4788   Low
cufflinks 14.4651 0.0 74.819   Low
cufflinks 39.6117 0.0 272.066 High  

0 Strain