Gene : Phvul.006G171200 P. vulgaris v2.1
Defline:  (1 of 2) K15731 - carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] (CTDSP) Genomic Order:  1719
Name:  ? Phvul.006G171200 Secondary Identifier:  ? PAC:37173623
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G171200 0.5kb upstream 0.5kb upstream 1638 true Chr06: 27445531-27447168 Phaseolus vulgaris
Phvul.006G171200 0.5kb upstream 0.5kb upstream 500 false Chr06: 27445531-27446030 Phaseolus vulgaris
Phvul.006G171200 0.5kb downstream 0.5kb downstream 1638 true Chr06: 27446031-27447668 Phaseolus vulgaris
Phvul.006G171200 0.5kb downstream 0.5kb downstream 500 false Chr06: 27447169-27447668 Phaseolus vulgaris
Phvul.006G171200 1.0kb upstream 1.0kb upstream 2138 true Chr06: 27445031-27447168 Phaseolus vulgaris
Phvul.006G171200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 27445031-27446030 Phaseolus vulgaris
Phvul.006G171200 1.0kb downstream 1.0kb downstream 2138 true Chr06: 27446031-27448168 Phaseolus vulgaris
Phvul.006G171200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 27447169-27448168 Phaseolus vulgaris
Phvul.006G171200 2.0kb upstream 2.0kb upstream 3138 true Chr06: 27444031-27447168 Phaseolus vulgaris
Phvul.006G171200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 27444031-27446030 Phaseolus vulgaris
Phvul.006G171200 2.0kb downstream 2.0kb downstream 3138 true Chr06: 27446031-27449168 Phaseolus vulgaris
Phvul.006G171200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 27447169-27449168 Phaseolus vulgaris
Phvul.006G171200 5.0kb upstream 5.0kb upstream 6138 true Chr06: 27441031-27447168 Phaseolus vulgaris
Phvul.006G171200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 27441031-27446030 Phaseolus vulgaris
Phvul.006G171200 5.0kb downstream 5.0kb downstream 6138 true Chr06: 27446031-27452168 Phaseolus vulgaris
Phvul.006G171200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 27447169-27452168 Phaseolus vulgaris
Phvul.006G171200 10.0kb upstream 10.0kb upstream 11138 true Chr06: 27436031-27447168 Phaseolus vulgaris
Phvul.006G171200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 27436031-27446030 Phaseolus vulgaris
Phvul.006G171200 10.0kb downstream 10.0kb downstream 11138 true Chr06: 27446031-27457168 Phaseolus vulgaris
Phvul.006G171200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 27447169-27457168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303996 5265 Fabidae View MSA
124050168 5270 Rosid View MSA
123737409 5271 Pentapetalae View MSA
122787896 5272 Eudicot View MSA
122044023 5273 Angiosperm View MSA
123429149 5275 Viridiplantae View MSA
121350808 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.58467 0.0 11.2381    
cufflinks 14.6832 0.0 39.9047    
cufflinks 1.47437 0.0 5.16306    
cufflinks 2.31053 0.0 7.50787    
cufflinks 11.158 0.0 30.8712    
cufflinks 11.4354 0.0 31.7904    
cufflinks 8.2308 0.0 23.3463    
cufflinks 3.90935 0.0 12.1759    
cufflinks 11.6925 0.0 32.1303    
cufflinks 0.267976 0.0 1.07751 Low Low
cufflinks 11.7397 0.0 32.3432    

0 Strain