Gene : Phvul.006G171800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33057:SF10 - OVATE FAMILY PROTEIN 5 Genomic Order:  1725
Name:  ? Phvul.006G171800 Secondary Identifier:  ? PAC:37173074
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G171800 0.5kb upstream 0.5kb upstream 1718 true Chr06: 27485470-27487187 Phaseolus vulgaris
Phvul.006G171800 0.5kb upstream 0.5kb upstream 500 false Chr06: 27486688-27487187 Phaseolus vulgaris
Phvul.006G171800 0.5kb downstream 0.5kb downstream 1718 true Chr06: 27484970-27486687 Phaseolus vulgaris
Phvul.006G171800 0.5kb downstream 0.5kb downstream 500 false Chr06: 27484970-27485469 Phaseolus vulgaris
Phvul.006G171800 1.0kb upstream 1.0kb upstream 2218 true Chr06: 27485470-27487687 Phaseolus vulgaris
Phvul.006G171800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 27486688-27487687 Phaseolus vulgaris
Phvul.006G171800 1.0kb downstream 1.0kb downstream 2218 true Chr06: 27484470-27486687 Phaseolus vulgaris
Phvul.006G171800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 27484470-27485469 Phaseolus vulgaris
Phvul.006G171800 2.0kb upstream 2.0kb upstream 3218 true Chr06: 27485470-27488687 Phaseolus vulgaris
Phvul.006G171800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 27486688-27488687 Phaseolus vulgaris
Phvul.006G171800 2.0kb downstream 2.0kb downstream 3218 true Chr06: 27483470-27486687 Phaseolus vulgaris
Phvul.006G171800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 27483470-27485469 Phaseolus vulgaris
Phvul.006G171800 5.0kb upstream 5.0kb upstream 6218 true Chr06: 27485470-27491687 Phaseolus vulgaris
Phvul.006G171800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 27486688-27491687 Phaseolus vulgaris
Phvul.006G171800 5.0kb downstream 5.0kb downstream 6218 true Chr06: 27480470-27486687 Phaseolus vulgaris
Phvul.006G171800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 27480470-27485469 Phaseolus vulgaris
Phvul.006G171800 10.0kb upstream 10.0kb upstream 11218 true Chr06: 27485470-27496687 Phaseolus vulgaris
Phvul.006G171800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 27486688-27496687 Phaseolus vulgaris
Phvul.006G171800 10.0kb downstream 10.0kb downstream 11218 true Chr06: 27475470-27486687 Phaseolus vulgaris
Phvul.006G171800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 27475470-27485469 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298451 5265 Fabidae View MSA
124050737 5270 Rosid View MSA
123750394 5271 Pentapetalae View MSA
122789866 5272 Eudicot View MSA
122048787 5273 Angiosperm View MSA
121311113 5274 Embryophyte View MSA
123348456 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0240064 0.0 0.118976 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.784888 0.0 2.82098   High
cufflinks 0.101646 0.0 0.440785 Low  
cufflinks 0.138592 0.0 0.584504 Low  
cufflinks 0.20912 0.0 0.839498 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0362097 0.0 0.169974 Low  
cufflinks 0.0844517 0.0 0.366768 Low  
cufflinks 0.0397798 0.0 0.187939 Low  
cufflinks 0.0767068 0.0 0.339373 Low  

0 Strain