Gene : Phvul.009G049400 P. vulgaris v2.1
Defline:  (1 of 2) K02927 - large subunit ribosomal protein L40e (RP-L40e, RPL40) Genomic Order:  498
Name:  ? Phvul.009G049400 Secondary Identifier:  ? PAC:37148943
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G049400 0.5kb upstream 0.5kb upstream 2622 true Chr09: 9675087-9677708 Phaseolus vulgaris
Phvul.009G049400 0.5kb upstream 0.5kb upstream 500 false Chr09: 9675087-9675586 Phaseolus vulgaris
Phvul.009G049400 0.5kb downstream 0.5kb downstream 2622 true Chr09: 9675587-9678208 Phaseolus vulgaris
Phvul.009G049400 0.5kb downstream 0.5kb downstream 500 false Chr09: 9677709-9678208 Phaseolus vulgaris
Phvul.009G049400 1.0kb upstream 1.0kb upstream 3122 true Chr09: 9674587-9677708 Phaseolus vulgaris
Phvul.009G049400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 9674587-9675586 Phaseolus vulgaris
Phvul.009G049400 1.0kb downstream 1.0kb downstream 3122 true Chr09: 9675587-9678708 Phaseolus vulgaris
Phvul.009G049400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 9677709-9678708 Phaseolus vulgaris
Phvul.009G049400 2.0kb upstream 2.0kb upstream 4122 true Chr09: 9673587-9677708 Phaseolus vulgaris
Phvul.009G049400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 9673587-9675586 Phaseolus vulgaris
Phvul.009G049400 2.0kb downstream 2.0kb downstream 4122 true Chr09: 9675587-9679708 Phaseolus vulgaris
Phvul.009G049400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 9677709-9679708 Phaseolus vulgaris
Phvul.009G049400 5.0kb upstream 5.0kb upstream 7122 true Chr09: 9670587-9677708 Phaseolus vulgaris
Phvul.009G049400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 9670587-9675586 Phaseolus vulgaris
Phvul.009G049400 5.0kb downstream 5.0kb downstream 7122 true Chr09: 9675587-9682708 Phaseolus vulgaris
Phvul.009G049400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 9677709-9682708 Phaseolus vulgaris
Phvul.009G049400 10.0kb upstream 10.0kb upstream 12122 true Chr09: 9665587-9677708 Phaseolus vulgaris
Phvul.009G049400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 9665587-9675586 Phaseolus vulgaris
Phvul.009G049400 10.0kb downstream 10.0kb downstream 12122 true Chr09: 9675587-9687708 Phaseolus vulgaris
Phvul.009G049400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 9677709-9687708 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314502 5265 Fabidae View MSA
124071470 5270 Rosid View MSA
123747920 5271 Pentapetalae View MSA
122794311 5272 Eudicot View MSA
122042303 5273 Angiosperm View MSA
121349234 5274 Embryophyte View MSA
123425972 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 67.7254 0.0 175.204 High  
cufflinks 97.9404 0.0 255.578 High High
cufflinks 39.3034 0.0 102.354 High  
cufflinks 102.815 0.0 268.721 High High
cufflinks 60.7305 0.0 156.977 High  
cufflinks 35.1255 0.0 92.0712 High  
cufflinks 48.1459 0.0 124.663 High  
cufflinks 64.8206 0.0 167.629 High  
cufflinks 86.1521 0.0 224.341 High  
cufflinks 17.8912 0.0 49.5278   Low
cufflinks 61.6122 0.0 159.256 High  

0 Strain