Gene : Phvul.009G052400 P. vulgaris v2.1
Defline:  (1 of 3) K03544 - ATP-dependent Clp protease ATP-binding subunit ClpX (clpX, CLPX) Genomic Order:  529
Name:  ? Phvul.009G052400 Secondary Identifier:  ? PAC:37148976
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G052400 0.5kb upstream 0.5kb upstream 11022 true Chr09: 10114278-10125299 Phaseolus vulgaris
Phvul.009G052400 0.5kb upstream 0.5kb upstream 500 false Chr09: 10114278-10114777 Phaseolus vulgaris
Phvul.009G052400 0.5kb downstream 0.5kb downstream 11022 true Chr09: 10114778-10125799 Phaseolus vulgaris
Phvul.009G052400 0.5kb downstream 0.5kb downstream 500 false Chr09: 10125300-10125799 Phaseolus vulgaris
Phvul.009G052400 1.0kb upstream 1.0kb upstream 11522 true Chr09: 10113778-10125299 Phaseolus vulgaris
Phvul.009G052400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 10113778-10114777 Phaseolus vulgaris
Phvul.009G052400 1.0kb downstream 1.0kb downstream 11522 true Chr09: 10114778-10126299 Phaseolus vulgaris
Phvul.009G052400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 10125300-10126299 Phaseolus vulgaris
Phvul.009G052400 2.0kb upstream 2.0kb upstream 12522 true Chr09: 10112778-10125299 Phaseolus vulgaris
Phvul.009G052400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 10112778-10114777 Phaseolus vulgaris
Phvul.009G052400 2.0kb downstream 2.0kb downstream 12522 true Chr09: 10114778-10127299 Phaseolus vulgaris
Phvul.009G052400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 10125300-10127299 Phaseolus vulgaris
Phvul.009G052400 5.0kb upstream 5.0kb upstream 15522 true Chr09: 10109778-10125299 Phaseolus vulgaris
Phvul.009G052400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 10109778-10114777 Phaseolus vulgaris
Phvul.009G052400 5.0kb downstream 5.0kb downstream 15522 true Chr09: 10114778-10130299 Phaseolus vulgaris
Phvul.009G052400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 10125300-10130299 Phaseolus vulgaris
Phvul.009G052400 10.0kb upstream 10.0kb upstream 20522 true Chr09: 10104778-10125299 Phaseolus vulgaris
Phvul.009G052400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 10104778-10114777 Phaseolus vulgaris
Phvul.009G052400 10.0kb downstream 10.0kb downstream 20522 true Chr09: 10114778-10135299 Phaseolus vulgaris
Phvul.009G052400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 10125300-10135299 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308819 5265 Fabidae View MSA
124065243 5270 Rosid View MSA
123749769 5271 Pentapetalae View MSA
122790976 5272 Eudicot View MSA
122041595 5273 Angiosperm View MSA
121347739 5274 Embryophyte View MSA
123427798 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.3027 0.0 153.098 High High
cufflinks 16.2951 0.0 45.5718    
cufflinks 38.0858 0.0 110.313   High
cufflinks 19.2901 0.0 53.776    
cufflinks 20.2317 0.0 56.463    
cufflinks 19.1453 0.0 53.3549    
cufflinks 15.4326 0.0 43.3196    
cufflinks 13.2176 0.0 37.4403   Low
cufflinks 17.4134 0.0 48.7125    
cufflinks 27.8006 0.0 77.8488    
cufflinks 19.3519 0.0 53.9998    

0 Strain